Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K6751_RS26405 Genome accession   NZ_CP082244
Coordinates   5765040..5767124 (-) Length   694 a.a.
NCBI ID   WP_107331193.1    Uniprot ID   -
Organism   Metapseudomonas otitidis strain CSMC7.1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5760040..5772124
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6751_RS26390 (K6751_26390) - 5761682..5763349 (-) 1668 WP_222900449.1 SPOR domain-containing protein -
  K6751_RS26395 (K6751_26395) aroB 5763360..5764463 (-) 1104 WP_142013730.1 3-dehydroquinate synthase -
  K6751_RS26400 (K6751_26400) aroK 5764516..5765034 (-) 519 WP_074973697.1 shikimate kinase AroK -
  K6751_RS26405 (K6751_26405) pilQ 5765040..5767124 (-) 2085 WP_107331193.1 type IV pilus secretin PilQ Machinery gene
  K6751_RS26410 (K6751_26410) pilP 5767179..5767709 (-) 531 WP_107331194.1 type 4a pilus biogenesis lipoprotein PilP -
  K6751_RS26415 (K6751_26415) pilO 5767709..5768332 (-) 624 WP_222900450.1 type 4a pilus biogenesis protein PilO -
  K6751_RS26420 (K6751_26420) pilN 5768329..5768901 (-) 573 WP_222900451.1 type 4a pilus biogenesis protein PilN -
  K6751_RS26425 (K6751_26425) pilM 5768901..5769965 (-) 1065 WP_044406728.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 74719.88 Da        Isoelectric Point: 5.0389

>NTDB_id=600516 K6751_RS26405 WP_107331193.1 5765040..5767124(-) (pilQ) [Metapseudomonas otitidis strain CSMC7.1]
MNSSLTRLGLSLLAAMFSPMLLAADLKALDVAALPGGKVELKLGFDGPVVQPRGYTIEQPARIALDLPGVANKLGSKNRE
LGVGNARSVTLVEAKDRTRMIINLSTLVPYSTRVEGNNLYVLVGDAAGAAQQAARTSAPVAAPSQPVAPVKAFATAGKAI
SNIDFQRGEQGEGNVVITLSDPSVSPNIQEQGGKIRLDFSKTQIPESLRVRLDVKDFATPVQFVSASGSSGDASIVIEPT
GFYDYLAYQTENKLTVSIKPLTQEDMEKRKTERFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQ
NVPWDQALDLVLKTKGLDKRKVGNVLLVAPADEIAARERQELESQKQISELAPLRRELIQVNYAKAADIAKLFQSVTSGE
PSTTDERGSITVDDRTNSIIAYQTQDKLDELRRIVTQLDIPVRQVMIEARIVEANVDYDKSLGVNWRGASIGDNNFNIGG
KGGVRTGANTTNPATALGTFVDMGATNSTSSIGIGFVTDNTILDLELSAMEKTGNGEIVSQPKVVTSDKETAKILKGAEI
PYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDAPDFSNALNGVPPINKNEVNAKVLVNDGETIVIGGVF
SNTQTKSTDKVPFLGDLPYLGRLFKRDTVQDKKAELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=600516 K6751_RS26405 WP_107331193.1 5765040..5767124(-) (pilQ) [Metapseudomonas otitidis strain CSMC7.1]
ATGAACAGCTCCCTAACGCGCCTTGGACTCTCTCTTCTGGCGGCCATGTTTTCACCCATGTTGCTGGCTGCTGACCTCAA
GGCTCTGGACGTCGCGGCCCTGCCGGGCGGGAAGGTCGAGCTGAAACTCGGTTTCGACGGCCCCGTTGTACAGCCGAGAG
GCTACACGATTGAACAGCCTGCAAGGATCGCATTGGATCTGCCCGGCGTTGCCAACAAACTTGGCAGCAAGAACCGCGAG
CTGGGGGTAGGTAACGCTCGGAGCGTCACTCTTGTCGAGGCGAAAGATCGCACTCGCATGATCATCAACCTGTCGACGTT
GGTGCCTTACAGCACGCGAGTTGAGGGTAACAACCTTTATGTTCTGGTTGGCGACGCTGCCGGCGCTGCTCAACAGGCTG
CTCGCACCAGTGCGCCAGTAGCGGCTCCGTCACAGCCTGTCGCACCGGTCAAAGCGTTCGCGACTGCGGGCAAGGCAATC
AGCAACATTGATTTCCAGAGGGGTGAGCAGGGCGAGGGTAACGTCGTCATTACCCTATCCGACCCCAGTGTGAGTCCCAA
CATTCAGGAGCAGGGCGGAAAGATTCGCCTGGACTTTTCCAAGACCCAAATTCCGGAGTCTCTGCGTGTTCGTCTTGATG
TAAAGGATTTCGCGACCCCGGTTCAGTTCGTCAGTGCCTCTGGCAGCTCGGGCGATGCCAGTATCGTGATCGAGCCGACG
GGCTTCTACGACTACCTGGCCTACCAGACTGAAAACAAGCTGACTGTCAGCATCAAACCGCTGACCCAAGAAGATATGGA
GAAGCGCAAGACGGAGCGCTTTGCATATTCTGGTGAAAAGCTCTCGCTCAATTTCCAGGATATTGATGTCCGCTCGGTAC
TGCAGCTGATCGCTGACTTCACCGATCTGAACCTGGTTGCGTCCGATACTGTACAAGGCAACATCACGCTCCGCCTGCAG
AACGTACCTTGGGATCAGGCACTTGATCTTGTCCTGAAAACCAAGGGGTTGGACAAGCGCAAGGTCGGTAACGTGCTGCT
GGTTGCACCGGCGGACGAGATCGCTGCCCGTGAACGCCAAGAACTGGAGTCTCAGAAGCAGATTTCCGAATTGGCTCCGC
TGCGCCGCGAGCTCATTCAGGTCAACTACGCCAAGGCAGCTGACATCGCCAAGCTCTTCCAGTCCGTCACGAGCGGAGAG
CCGTCAACCACTGATGAGCGGGGCTCCATTACCGTCGATGATCGTACCAACAGCATCATTGCCTACCAGACTCAGGACAA
ACTGGACGAACTGCGTCGCATCGTTACCCAGCTCGATATTCCGGTTCGCCAAGTAATGATCGAGGCTCGGATCGTTGAGG
CCAACGTCGACTATGACAAGTCGCTCGGTGTGAACTGGCGTGGTGCTAGCATCGGTGACAACAACTTTAATATCGGCGGC
AAGGGAGGGGTGCGCACCGGCGCTAACACCACCAACCCGGCGACTGCTCTTGGCACTTTCGTTGATATGGGGGCTACCAA
CTCGACGTCTTCCATCGGCATTGGCTTCGTCACAGACAACACAATCCTTGACCTTGAGCTCTCGGCAATGGAGAAGACCG
GTAACGGTGAAATTGTTTCCCAGCCGAAGGTTGTCACCTCTGACAAAGAGACCGCCAAAATCCTGAAGGGTGCAGAAATC
CCTTACCAGGAAGCCAGCTCCAGTGGCGCCACCAGCACCTCCTTCAAAGAGGCCGCTCTGTCCCTCGAGGTAACCCCGCA
GATCACGCCTGACAACCGCATCATCATGGAAGTCAAGGTGACCAAGGATGCTCCTGACTTCTCCAATGCCCTTAATGGCG
TACCCCCGATCAACAAGAACGAGGTTAACGCCAAGGTCTTGGTGAATGACGGCGAAACCATCGTGATCGGTGGCGTGTTC
TCAAATACCCAGACCAAGTCCACCGACAAGGTACCGTTCCTGGGCGATCTTCCTTACCTCGGCCGGCTGTTCAAGCGTGA
CACCGTCCAGGACAAGAAAGCCGAGCTGCTGGTATTCCTGACTCCGCGTATCATGAACAACCAGGCTATCGCTGTGAGTC
GCTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(40-121)

Secretin and TonB N terminus short domain (STN)

(304-350)

Bacterial type II/III secretion system short domain (Secretin_N)

(378-444)

Bacterial type II and III secretion system protein (Secretin)

(529-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

76.848

100

0.794
  comQ Acinetobacter baylyi ADP1

43.741

100

0.438
  pilQ Acinetobacter baumannii strain A118

41.655

100

0.421
  pilQ Acinetobacter baumannii D1279779

41.655

100

0.421
  pilQ Legionella pneumophila strain Lp02

39.323

97.839

0.385
  pilQ Legionella pneumophila strain ERS1305867

39.323

97.839

0.385