NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	K6973_RS02480	Genome accession	NZ_CP082206
Coordinates	464163..464753 (+)	Length	196 a.a.
NCBI ID	WP_002985850.1	Uniprot ID	A0A9X8T4H8
Organism	Streptococcus dysgalactiae strain DY107
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 459163..469753

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6973_RS02465 (K6973_02465)	-	459946..461391 (-)	1446	WP_218655115.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	-
K6973_RS02470 (K6973_02470)	-	461479..463113 (+)	1635	WP_218655116.1	polysaccharide biosynthesis protein	-
K6973_RS02475 (K6973_02475)	upp	463311..463940 (+)	630	WP_003058279.1	uracil phosphoribosyltransferase	-
K6973_RS02480 (K6973_02480)	clpP	464163..464753 (+)	591	WP_002985850.1	ATP-dependent Clp protease proteolytic subunit	Regulator
K6973_RS02485 (K6973_02485)	-	465149..465445 (+)	297	WP_218655117.1	DUF4298 domain-containing protein	-
K6973_RS02490 (K6973_02490)	-	465520..465990 (+)	471	WP_218655118.1	YlbF family regulator	-
K6973_RS02495 (K6973_02495)	-	465966..466256 (+)	291	WP_003060978.1	YlbG family protein	-
K6973_RS02500 (K6973_02500)	-	466506..467678 (+)	1173	WP_222819523.1	ABC transporter substrate-binding protein	-
K6973_RS02505 (K6973_02505)	-	467867..468736 (+)	870	WP_003060403.1	branched-chain amino acid ABC transporter permease	-
K6973_RS02510 (K6973_02510)	-	468740..469693 (+)	954	WP_218655120.1	branched-chain amino acid ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21648.88 Da Isoelectric Point: 5.2834

                                >NTDB_id=600091 K6973_RS02480 WP_002985850.1 464163..464753(+) (clpP) [Streptococcus dysgalactiae strain DY107]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSVIAQLLFLDAQDNTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGMAASMGTVIASSGTKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAQNAGK

TIKQIHKDAERDYWMSAEETLAYGFIDEIMENNELK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=600091 K6973_RS02480 WP_002985850.1 464163..464753(+) (clpP) [Streptococcus dysgalactiae strain DY107]

ATGATTCCTGTTGTTATTGAACAAACTAGTCGTGGTGAACGTTCTTATGACATTTACTCACGCTTATTAAAAGACCGTAT

TATCATGTTGACAGGCCCTGTTGAGGACAACATGGCAAACTCTGTCATTGCGCAGCTTTTATTCCTTGATGCTCAGGACA

ATACGAAAGACATTTATTTGTATGTCAACACACCTGGTGGTTCTGTTTCAGCGGGTTTGGCTATTGTCGACACCATGAAC

TTTATCAAAGCTGATGTCCAAACCATTGTTATGGGGATGGCCGCTTCTATGGGGACTGTCATTGCTTCATCAGGTACTAA

GGGCAAACGCTTCATGTTACCAAATGCAGAATACATGATTCACCAACCAATGGGTGGTACAGGTGGTGGTACACAACAAA

CAGATATGGCCATTGCTGCAGAGCACCTCTTAAAAACTCGTCACCGTTTAGAAAAAATCTTAGCACAAAATGCTGGAAAG

ACCATTAAACAAATTCACAAAGATGCTGAACGTGATTATTGGATGAGTGCTGAAGAAACCTTGGCTTACGGTTTCATTGA

TGAAATCATGGAAAATAACGAATTAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes MGAS315	100	100	1
clpP	Streptococcus pyogenes JRS4	100	100	1
clpP	Streptococcus mutans UA159	90.816	100	0.908
clpP	Streptococcus pneumoniae Rx1	90.769	99.49	0.903
clpP	Streptococcus pneumoniae D39	90.769	99.49	0.903
clpP	Streptococcus pneumoniae R6	90.769	99.49	0.903
clpP	Streptococcus pneumoniae TIGR4	90.769	99.49	0.903
clpP	Streptococcus thermophilus LMG 18311	89.796	100	0.898
clpP	Streptococcus thermophilus LMD-9	89.796	100	0.898
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	86.224	100	0.862
clpP	Lactococcus lactis subsp. cremoris KW2	85.714	100	0.857
clpP	Bacillus subtilis subsp. subtilis str. 168	57.143	100	0.571
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	56.995	98.469	0.561

Detailed information NTG0600091