NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	K6969_RS03930	Genome accession	NZ_CP082205
Coordinates	781875..782465 (+)	Length	196 a.a.
NCBI ID	WP_014638366.1	Uniprot ID	A0A0Z8P1Q4
Organism	Streptococcus suis strain AKJ18
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 776875..787465

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6969_RS03910 (K6969_03850)	-	777000..777830 (+)	831	WP_002937312.1	carbohydrate ABC transporter permease	-
K6969_RS03915 (K6969_03855)	gtfA	777900..779348 (+)	1449	WP_171942649.1	sucrose phosphorylase	-
K6969_RS03920 (K6969_03860)	-	779421..781037 (+)	1617	WP_171942650.1	glycoside hydrolase family 13 protein	-
K6969_RS03925 (K6969_03865)	upp	781119..781748 (+)	630	WP_002937309.1	uracil phosphoribosyltransferase	-
K6969_RS03930 (K6969_03870)	clpP	781875..782465 (+)	591	WP_014638366.1	ATP-dependent Clp protease proteolytic subunit	Regulator
K6969_RS03935 (K6969_03875)	-	782592..782864 (+)	273	WP_002937299.1	YlbG family protein	-
K6969_RS03940 (K6969_03880)	-	782996..784168 (+)	1173	WP_171942651.1	ABC transporter substrate-binding protein	-
K6969_RS03945 (K6969_03885)	-	784331..785218 (+)	888	WP_029173565.1	branched-chain amino acid ABC transporter permease	-
K6969_RS03950 (K6969_03890)	-	785221..786168 (+)	948	WP_029175313.1	branched-chain amino acid ABC transporter permease	-
K6969_RS03955 (K6969_03895)	-	786168..786932 (+)	765	WP_029175312.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21508.76 Da Isoelectric Point: 5.7110

                                >NTDB_id=600046 K6969_RS03930 WP_014638366.1 781875..782465(+) (clpP) [Streptococcus suis strain AKJ18]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMTAEETLAYGFIDQIMDNTKVK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=600046 K6969_RS03930 WP_014638366.1 781875..782465(+) (clpP) [Streptococcus suis strain AKJ18]

ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAACGTTCTTATGATATTTATTCACGCCTATTGAAAGATCGTAT

TATCATGTTGACAGGACCAGTTGAGGATAATATGGCAAATTCAATCATTGCCCAGTTGCTTTTCCTTGATGCCCAAGACC

CAACCAAAGATATTTACCTTTATGTAAATACACCTGGTGGATCTGTATCAGCTGGTCTAGCTATTGTAGATACTATGAAT

TTTATCAAGGCTGATGTACAAACAATCGTCATGGGGACAGCTGCCAGCATGGGTACAATTATCGCTTCAAGTGGTGCCAA

AGGCAAACGTTTCATGTTGCCAAATGCAGAATACATGATTCACCAACCAATGGGTGGAACAGGTGGCGGTACACAGCAAA

CGGATATGGCCATTGCAGCAGAACACTTGCTCAAAACTCGTAACAAATTGGAAAAAATCTTGGCTGACAATTCAGGAAAA

ACAGTGAAACAAATCCATAAGGATGCAGAACGCGATTACTGGATGACAGCAGAAGAAACGCTAGCTTACGGATTTATTGA

CCAAATTATGGACAATACGAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0Z8P1Q4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	91.837	100	0.918
clpP	Streptococcus pyogenes MGAS315	91.837	100	0.918
clpP	Streptococcus mutans UA159	90.306	100	0.903
clpP	Streptococcus pneumoniae R6	88.265	100	0.883
clpP	Streptococcus pneumoniae Rx1	88.265	100	0.883
clpP	Streptococcus pneumoniae D39	88.265	100	0.883
clpP	Streptococcus pneumoniae TIGR4	88.265	100	0.883
clpP	Streptococcus thermophilus LMG 18311	88.265	100	0.883
clpP	Streptococcus thermophilus LMD-9	88.265	100	0.883
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	100	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.031	98.469	0.571

Detailed information NTG0600046