Detailed information    

insolico Bioinformatically predicted

Overview

Name   recP/tkt   Type   Machinery gene
Locus tag   NAT22_RS32055 Genome accession   NZ_CP098485
Coordinates   7078656..7080731 (-) Length   691 a.a.
NCBI ID   WP_251095670.1    Uniprot ID   -
Organism   Streptomyces sp. Caat 7-52     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 7073656..7085731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NAT22_RS32040 opcA 7074954..7075880 (-) 927 WP_201813735.1 glucose-6-phosphate dehydrogenase assembly protein OpcA -
  NAT22_RS32045 zwf 7075877..7077466 (-) 1590 WP_251095669.1 glucose-6-phosphate dehydrogenase -
  NAT22_RS32050 tal 7077466..7078608 (-) 1143 WP_251096948.1 transaldolase -
  NAT22_RS32055 recP/tkt 7078656..7080731 (-) 2076 WP_251095670.1 transketolase Machinery gene
  NAT22_RS32060 - 7080878..7081969 (+) 1092 WP_251095671.1 AraC family transcriptional regulator -
  NAT22_RS32065 - 7081991..7083385 (-) 1395 WP_251095672.1 glycoside hydrolase family 16 protein -
  NAT22_RS32070 - 7083730..7084068 (+) 339 WP_201813731.1 nuclear transport factor 2 family protein -
  NAT22_RS32075 - 7084277..7085614 (+) 1338 WP_251095673.1 6-phospho-beta-glucosidase -

Sequence

Protein


Download         Length: 691 a.a.        Molecular weight: 74483.21 Da        Isoelectric Point: 4.7537

>NTDB_id=599997 NAT22_RS32055 WP_251095670.1 7078656..7080731(-) (recP/tkt) [Streptomyces sp. Caat 7-52]
MTTQPSDGFEWTDLDRRAVDTARLLAADAVQKVGNGHPGTAMSLAPAAYTIFQKVMRHDPADPEWTGRDRFVLSPGHTSL
TLYTQLFLAGYELELDDLLAFRTHGSKTPGHPEYGHTAGVETTTGPLGQGVANAVGMAMAARYERGLFDPEAPAGTSPFD
HTIWAIVSDGDLEEGVSAEASSLAGHQKLGNLVFLYDDNHISIEGDTATAFSEDVLKRYEAYGWHTQRIEPTADGDVDAP
ALYAALEAARAETGRPSIIAMRTVIAWPAPNARNTEASHGSALGEEEIAATKRLLGFDPEQAFEVADDVLKHARQALDRG
AEAHAAWDRRIAEWRAARPERAELFDRVSKGELPEGWQDALPVFEEGKSVATRAASGRVLQALGPVLPELWGGSADLAGS
NNTTIDKDSSFLPEGNPLPEADPYGRTVHFGIREFSMAAEMNGIALHGNTRIYGGTFLVFSDYMRNAVRMSALMQLPVTY
VWTHDSVGLGEDGPTHQPVEHLASLRAIPGLNVVRPADANETAIAWAEILKRHATHPAPHGLALTRQGVPVYAPNEDAAK
GGYVLGESSTEVPEVIIIATGSEVQLAVAARERLEAEGIGTRVVSMPSVEWFEEQPREYRERVLPPAVRARVAVEAGIGL
TWYRFVGDAGRIVSLEHFGASADAKTLFAEFGFTPENVAAAARESLAAVRA

Nucleotide


Download         Length: 2076 bp        

>NTDB_id=599997 NAT22_RS32055 WP_251095670.1 7078656..7080731(-) (recP/tkt) [Streptomyces sp. Caat 7-52]
ATGACCACGCAGCCTTCCGACGGTTTCGAGTGGACCGACCTCGACCGGCGCGCCGTGGACACCGCCCGACTTCTTGCGGC
CGACGCGGTGCAGAAGGTGGGCAACGGGCACCCGGGGACGGCGATGAGCCTGGCGCCTGCCGCGTACACGATCTTTCAGA
AGGTGATGCGACACGACCCGGCGGACCCTGAGTGGACCGGCCGGGACCGTTTCGTCCTCTCCCCCGGTCACACCTCGCTG
ACCCTCTACACGCAGCTCTTCCTCGCCGGGTACGAGCTGGAGCTGGACGACCTGTTGGCCTTCCGCACGCACGGCTCGAA
GACGCCGGGCCACCCCGAGTACGGGCACACCGCGGGCGTGGAGACCACCACGGGCCCGCTCGGCCAGGGCGTCGCCAACG
CCGTCGGCATGGCGATGGCCGCCCGCTACGAGCGCGGCCTGTTCGACCCGGAGGCCCCCGCGGGCACCTCCCCGTTCGAC
CACACGATCTGGGCGATCGTCTCCGACGGCGACCTGGAGGAGGGCGTCTCCGCCGAGGCGTCCTCGCTGGCCGGGCACCA
GAAGCTCGGCAACCTGGTCTTCCTCTACGACGACAACCACATCTCCATCGAGGGCGACACCGCCACCGCCTTCTCCGAGG
ACGTGCTGAAGCGGTACGAGGCGTACGGCTGGCACACCCAGCGCATCGAGCCCACCGCCGACGGCGACGTCGACGCCCCC
GCCCTGTACGCGGCGCTGGAGGCCGCCCGGGCCGAGACCGGGCGGCCCTCGATCATCGCGATGCGCACGGTCATCGCCTG
GCCCGCCCCGAACGCGCGGAACACCGAGGCCTCCCACGGCTCCGCGCTCGGCGAGGAGGAGATCGCGGCCACCAAGCGGC
TCCTCGGCTTCGACCCGGAGCAGGCCTTCGAGGTCGCCGACGACGTCCTGAAGCACGCCCGGCAGGCCCTGGACCGGGGC
GCCGAGGCGCACGCGGCCTGGGACAGGCGGATCGCCGAGTGGCGTGCCGCCCGGCCCGAGCGGGCCGAACTGTTCGACCG
CGTCAGCAAGGGCGAGCTGCCCGAGGGCTGGCAGGACGCACTGCCGGTGTTCGAGGAGGGCAAGTCGGTCGCGACCCGTG
CCGCCTCCGGCAGGGTGCTCCAGGCGCTCGGCCCGGTCCTGCCCGAGCTGTGGGGCGGCTCCGCGGACCTGGCCGGCTCG
AACAACACGACCATCGACAAGGACAGCTCCTTCCTGCCCGAGGGCAACCCGCTGCCCGAGGCCGACCCGTACGGCCGTAC
CGTGCACTTCGGCATCCGCGAGTTCTCCATGGCCGCGGAGATGAACGGCATCGCCCTGCACGGCAACACCCGGATCTACG
GCGGCACCTTCCTCGTCTTCTCCGACTACATGCGCAACGCCGTCCGGATGTCGGCGCTGATGCAGCTGCCGGTGACGTAC
GTGTGGACGCACGACTCCGTCGGCCTCGGCGAGGACGGCCCCACCCACCAGCCGGTCGAGCACCTGGCCTCGCTGCGCGC
GATCCCGGGCCTGAACGTCGTCCGCCCGGCGGACGCCAACGAGACCGCGATCGCCTGGGCCGAGATCCTGAAGAGGCACG
CCACGCACCCGGCCCCGCACGGGCTCGCGCTCACCCGCCAGGGCGTGCCGGTGTACGCGCCGAACGAGGACGCGGCCAAG
GGCGGCTACGTACTGGGCGAGTCCTCGACGGAGGTCCCGGAGGTGATCATCATCGCGACGGGCTCCGAGGTGCAGCTGGC
CGTGGCCGCGCGGGAACGGCTGGAGGCCGAGGGCATCGGCACGCGCGTGGTGTCGATGCCGTCCGTGGAGTGGTTCGAGG
AGCAGCCCCGCGAGTACCGCGAGCGGGTGCTGCCGCCGGCCGTGCGGGCCCGGGTCGCCGTCGAGGCCGGCATCGGCCTG
ACCTGGTACCGGTTCGTGGGCGACGCCGGACGCATCGTCTCGCTCGAACACTTCGGTGCCTCCGCGGACGCGAAGACCCT
GTTCGCCGAGTTCGGCTTCACCCCCGAGAACGTCGCCGCCGCGGCCCGCGAGTCCCTCGCCGCCGTACGCGCGTGA

Domains

Predicted by InterProScan.

Transketolase, pyrimidine binding domain (Transket_pyr)

(369-547)

Transketolase, C-terminal domain (Transketolase_C)

(571-678)

Transketolase, thiamine diphosphate binding domain (Transketolase_N)

(15-354)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recP/tkt Streptococcus pneumoniae TIGR4

46.074

97.685

0.45