NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	K6974_RS09285	Genome accession	NZ_CP082204
Coordinates	1858517..1859107 (-)	Length	196 a.a.
NCBI ID	WP_002937303.1	Uniprot ID	A0A0K2E545
Organism	Streptococcus suis strain FJSM5
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1853517..1864107

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
K6974_RS09260 (K6974_09175)	-	1854020..1854784 (-)	765	WP_024376797.1	ABC transporter ATP-binding protein	-
K6974_RS09265 (K6974_09180)	-	1854784..1855731 (-)	948	WP_029996528.1	branched-chain amino acid ABC transporter permease	-
K6974_RS09270 (K6974_09185)	-	1855734..1856621 (-)	888	WP_024378397.1	branched-chain amino acid ABC transporter permease	-
K6974_RS09275 (K6974_09190)	-	1856817..1857986 (-)	1170	WP_024378396.1	ABC transporter substrate-binding protein	-
K6974_RS09280 (K6974_09195)	-	1858118..1858390 (-)	273	WP_002937299.1	YlbG family protein	-
K6974_RS09285 (K6974_09200)	clpP	1858517..1859107 (-)	591	WP_002937303.1	ATP-dependent Clp protease proteolytic subunit	Regulator
K6974_RS09290 (K6974_09205)	upp	1859229..1859858 (-)	630	WP_099779813.1	uracil phosphoribosyltransferase	-
K6974_RS09295 (K6974_09210)	-	1859941..1861557 (-)	1617	WP_222337007.1	alpha-glucosidase	-
K6974_RS09300 (K6974_09215)	gtfA	1861630..1863078 (-)	1449	WP_044673186.1	sucrose phosphorylase	-
K6974_RS09305 (K6974_09220)	-	1863148..1863978 (-)	831	WP_009910491.1	carbohydrate ABC transporter permease	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21494.74 Da Isoelectric Point: 5.7110

                                >NTDB_id=599997 K6974_RS09285 WP_002937303.1 1858517..1859107(-) (clpP) [Streptococcus suis strain FJSM5]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGPVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMSAEETLAYGFIDQIMDNTKVK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=599997 K6974_RS09285 WP_002937303.1 1858517..1859107(-) (clpP) [Streptococcus suis strain FJSM5]

ATGATTCCAGTAGTTATTGAACAAACTAGCCGTGGTGAGCGTTCTTATGATATTTACTCACGCCTTTTGAAAGACCGCAT

TATCATGTTGACAGGACCAGTTGAGGACAACATGGCAAACTCTATCATTGCCCAATTGCTTTTCCTTGATGCCCAAGACC

CTACAAAGGATATTTACCTCTATGTTAATACGCCAGGAGGATCGGTGTCAGCAGGTCTTGCCATTGTAGACACGATGAAT

TTCATTAAAGCTGATGTTCAAACCATCGTTATGGGAACAGCTGCGAGCATGGGAACCATCATTGCATCAAGCGGTGCCAA

GGGCAAACGTTTCATGTTGCCAAATGCGGAATACATGATTCACCAGCCAATGGGTGGAACTGGTGGCGGTACTCAGCAAA

CGGATATGGCCATTGCTGCAGAACACCTATTAAAAACACGTAATAAGCTAGAAAAAATCTTGGCAGACAACTCAGGTAAG

ACAGTGAAACAAATCCATAAGGATGCGGAACGCGATTACTGGATGTCAGCTGAAGAAACCTTGGCTTACGGATTTATTGA

CCAGATTATGGACAATACAAAAGTCAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	A0A0K2E545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes JRS4	92.347	100	0.923
clpP	Streptococcus pyogenes MGAS315	92.347	100	0.923
clpP	Streptococcus mutans UA159	90.306	100	0.903
clpP	Streptococcus pneumoniae R6	88.776	100	0.888
clpP	Streptococcus pneumoniae Rx1	88.776	100	0.888
clpP	Streptococcus pneumoniae D39	88.776	100	0.888
clpP	Streptococcus pneumoniae TIGR4	88.776	100	0.888
clpP	Streptococcus thermophilus LMG 18311	88.776	100	0.888
clpP	Streptococcus thermophilus LMD-9	88.776	100	0.888
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	58.163	100	0.582
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.549	98.469	0.577

Detailed information NTG0599997