Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   NC854_RS11910 Genome accession   NZ_CP098470
Coordinates   1951911..1952312 (-) Length   133 a.a.
NCBI ID   WP_318153215.1    Uniprot ID   -
Organism   Neisseria gonorrhoeae strain 10792     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1946911..1957312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  NC854_RS10240 (NC854_10125) - 1948413..1948697 (-) 285 WP_003692093.1 GIY-YIG nuclease family protein -
  NC854_RS11900 pilC 1949604..1951054 (-) 1451 Protein_1971 PilC family type IV pilus tip adhesin -
  NC854_RS11905 pilC 1951008..1951619 (-) 612 WP_318153214.1 hypothetical protein Machinery gene
  NC854_RS11910 pilC 1951911..1952312 (-) 402 WP_318153215.1 hypothetical protein Machinery gene
  NC854_RS11915 pilC 1952567..1952698 (-) 132 WP_318153216.1 hypothetical protein Machinery gene
  NC854_RS10250 (NC854_10140) - 1953256..1953648 (+) 393 WP_010360973.1 hypothetical protein -
  NC854_RS10255 (NC854_10145) gnd 1953728..1955176 (+) 1449 WP_003688061.1 decarboxylating NADP(+)-dependent phosphogluconate dehydrogenase -
  NC854_RS10260 (NC854_10150) waaA 1955239..1956510 (+) 1272 WP_010360974.1 lipid IV(A) 3-deoxy-D-manno-octulosonic acid transferase -
  NC854_RS10265 (NC854_10155) - 1956551..1957000 (+) 450 WP_003688065.1 CopD family copper resistance protein -

Sequence

Protein


Download         Length: 133 a.a.        Molecular weight: 14958.80 Da        Isoelectric Point: 8.4439

>NTDB_id=599788 NC854_RS11910 WP_318153215.1 1951911..1952312(-) (pilC) [Neisseria gonorrhoeae strain 10792]
MPLIGFVPPYFGLAGYAYTDVICRDAGQCPQLVYETKFAFGQQGLQRNGNKLDIYEDKSRDNSPIYKLKDYPWLGVSFNL
GSENTVKNGRSSGRLISSFSENNNNQTIVSTTRDRPISLGDRQREHTAVVFII

Nucleotide


Download         Length: 402 bp        

>NTDB_id=599788 NC854_RS11910 WP_318153215.1 1951911..1952312(-) (pilC) [Neisseria gonorrhoeae strain 10792]
ATGCCGTTGATTGGATTCGTACCACCTTACTTCGGGCTGGCAGGCTACGCCTACACCGACGTCATATGCAGAGACGCAGG
GCAATGCCCCCAACTTGTCTATGAGACCAAATTTGCCTTCGGTCAACAAGGGTTGCAAAGAAATGGCAACAAGCTGGATA
TATACGAAGACAAAAGCCGCGACAATTCGCCCATTTACAAATTGAAGGATTATCCATGGTTGGGCGTATCTTTCAATTTG
GGCAGCGAGAATACCGTCAAAAATGGCAGATCATCCGGCAGATTGATATCTTCTTTTAGTGAAAACAATAATAATCAAAC
CATCGTCTCTACGACACGAGACCGCCCTATTTCCCTTGGCGACCGGCAGCGCGAACATACCGCCGTGGTATTTATTATCT
GA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Neisseria meningitidis A1493

71.311

91.729

0.654