Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   L897_RS07900 Genome accession   NC_021807
Coordinates   1557878..1558429 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes HSC5     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1552878..1563429
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  L897_RS07875 (L897_08065) - 1554244..1555089 (+) 846 WP_002982833.1 mechanosensitive ion channel family protein -
  L897_RS07880 (L897_08070) - 1555154..1555714 (-) 561 WP_020837772.1 TIGR01440 family protein -
  L897_RS07885 (L897_08075) - 1555728..1556198 (-) 471 WP_011106596.1 ECF transporter S component -
  L897_RS07890 (L897_08080) - 1556188..1556952 (-) 765 WP_020837773.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  L897_RS07895 (L897_08085) truA 1556942..1557691 (-) 750 WP_002995162.1 tRNA pseudouridine(38-40) synthase TruA -
  L897_RS07900 comX/sigX/comX2/sigX2 1557878..1558429 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=59948 L897_RS07900 WP_010921894.1 1557878..1558429(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes HSC5]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=59948 L897_RS07900 WP_010921894.1 1557878..1558429(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes HSC5]
GTGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATCTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.