Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   K6J69_RS05995 Genome accession   NZ_AP018777
Coordinates   1216998..1218338 (+) Length   446 a.a.
NCBI ID   WP_110430823.1    Uniprot ID   -
Organism   Haemophilus influenzae strain CHBN-III-6 isolate 13H31     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1211998..1223338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K6J69_RS05980 (CHBNIII6_11310) lrp 1213062..1213541 (+) 480 WP_005653255.1 leucine-responsive transcriptional regulator Lrp -
  K6J69_RS05985 (CHBNIII6_11320) - 1213543..1216302 (+) 2760 WP_110430824.1 DNA translocase FtsK -
  K6J69_RS05990 (CHBNIII6_11330) lolA 1216320..1216937 (+) 618 WP_050847573.1 outer membrane lipoprotein chaperone LolA -
  K6J69_RS05995 (CHBNIII6_11340) rarA 1216998..1218338 (+) 1341 WP_110430823.1 replication-associated recombination protein A Machinery gene
  K6J69_RS06000 (CHBNIII6_11350) aroA 1218424..1219722 (-) 1299 WP_110430822.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  K6J69_RS06005 (CHBNIII6_11360) purU 1219722..1220558 (-) 837 WP_005690073.1 formyltetrahydrofolate deformylase -
  K6J69_RS06010 (CHBNIII6_11370) - 1220629..1221033 (-) 405 WP_110430821.1 H-NS family nucleoid-associated regulatory protein -
  K6J69_RS06015 (CHBNIII6_11380) - 1221484..1223004 (+) 1521 WP_146207575.1 Na+/H+ antiporter NhaC family protein -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 50315.12 Da        Isoelectric Point: 6.3312

>NTDB_id=59937 K6J69_RS05995 WP_110430823.1 1216998..1218338(+) (rarA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
MSNFNFDFVENDFRPLAARMRPTSLEQYFGQSHLIGEGKPLRKAIQAGHIHSMIFWGPPGTGKTTLAEIIAQRINAEVER
ISAVTSGIKEIREAIDRAKQNRLADRKTILFVDEVHRFNKSQQDAFLPHIEDGTVIFIGATTENPSFELNNALLSRARVY
VLKSLTTAEIEQVLQQAVEDPERGLGKERLILEENLLQVLAEYVNGDARLALNCLELMVDMADETENGKKIDRTLLKEVL
GERQARFDKQGDRFYDLISALHKSVRGSAPDAALYWYARILTAGGDPLYVARRLLAIASEDVGNADPRAMQVALAAWDCF
TRVGAYEGERAIAQAIIYLAVAPKSNAVYTAFNTAKQQAKDLPDYDVPPHLRNAPTNLMKELGYGAEYRYAHDEPNAYAA
GENYFPPELKDTQYYFPTNRGMEIQIKEKLERLREQDKSAVKKRYK

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=59937 K6J69_RS05995 WP_110430823.1 1216998..1218338(+) (rarA) [Haemophilus influenzae strain CHBN-III-6 isolate 13H31]
ATGTCGAACTTCAATTTTGATTTTGTCGAAAATGATTTTCGTCCACTGGCGGCAAGAATGCGTCCAACGAGTCTAGAACA
GTATTTTGGGCAAAGCCATTTAATTGGCGAGGGCAAACCACTGCGAAAAGCGATTCAAGCTGGACATATTCATTCTATGA
TTTTCTGGGGGCCACCAGGTACGGGAAAAACGACCCTTGCAGAAATTATTGCGCAACGTATTAATGCAGAAGTAGAGCGA
ATTTCTGCAGTGACGAGTGGTATCAAAGAAATTAGAGAAGCGATTGATCGTGCAAAACAAAATCGTCTTGCAGATCGTAA
AACTATCTTGTTTGTGGATGAAGTCCATCGTTTTAATAAAAGCCAGCAAGATGCATTTTTACCACACATTGAAGACGGAA
CGGTTATTTTTATTGGGGCGACAACAGAAAATCCCTCTTTTGAGCTAAATAATGCGTTGCTTTCTCGTGCACGAGTGTAT
GTACTGAAATCACTTACGACGGCTGAAATTGAACAAGTTTTGCAGCAAGCTGTAGAAGATCCTGAACGAGGATTGGGTAA
AGAGCGGTTAATTTTAGAAGAGAATTTACTGCAAGTGCTTGCCGAATATGTTAATGGGGATGCTCGATTAGCCTTGAATT
GCCTCGAATTAATGGTGGATATGGCGGATGAAACGGAAAATGGAAAGAAAATTGATCGCACTTTATTAAAAGAAGTCTTA
GGCGAACGCCAAGCGAGATTTGATAAACAAGGCGATCGTTTCTATGATTTAATTTCTGCGCTACATAAATCTGTCCGAGG
TTCTGCTCCAGATGCTGCGTTGTATTGGTATGCAAGAATTTTAACGGCAGGTGGCGATCCTCTATATGTCGCACGCCGAT
TACTTGCCATTGCTTCAGAAGATGTGGGAAATGCAGATCCTCGCGCTATGCAAGTCGCATTGGCTGCATGGGACTGCTTT
ACTAGAGTGGGGGCTTATGAAGGGGAGCGTGCCATTGCCCAAGCCATCATTTATCTTGCGGTTGCTCCAAAAAGCAATGC
AGTTTATACGGCGTTTAACACTGCGAAACAGCAGGCTAAAGATTTGCCAGATTATGATGTTCCCCCACATTTACGCAATG
CGCCGACTAATTTAATGAAAGAGCTTGGCTATGGTGCTGAATATCGTTATGCCCACGATGAACCTAACGCTTATGCGGCA
GGCGAAAATTATTTCCCGCCTGAATTAAAAGATACTCAATATTATTTTCCGACAAATAGAGGTATGGAAATTCAGATTAA
GGAAAAACTAGAACGTTTACGTGAGCAAGATAAAAGTGCGGTAAAAAAACGGTATAAATAA

Domains

Predicted by InterProScan.

AAA C-terminal domain (AAA_assoc_2)

(188-266)

MgsA AAA+ ATPase C terminal (MgsA_C)

(267-433)

ATPase family associated with various cellular activities (AAA) (AAA)

(53-159)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

39.243

94.843

0.372

Multiple sequence alignment