Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   K5R88_RS23225 Genome accession   NZ_CP081943
Coordinates   5077496..5079580 (+) Length   694 a.a.
NCBI ID   WP_226298428.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5072496..5084580
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS23205 (K5R88_23090) comM 5074708..5075772 (+) 1065 WP_226298425.1 pilus assembly protein PilM Machinery gene
  K5R88_RS23210 (K5R88_23095) - 5075772..5076338 (+) 567 WP_226298426.1 PilN domain-containing protein -
  K5R88_RS23215 (K5R88_23100) pilO 5076335..5076958 (+) 624 WP_008041857.1 type 4a pilus biogenesis protein PilO -
  K5R88_RS23220 (K5R88_23105) - 5076955..5077482 (+) 528 WP_226298427.1 pilus assembly protein PilP -
  K5R88_RS23225 (K5R88_23110) pilQ 5077496..5079580 (+) 2085 WP_226298428.1 type IV pilus secretin PilQ Machinery gene
  K5R88_RS23230 (K5R88_23115) aroK 5079585..5080103 (+) 519 WP_032828585.1 shikimate kinase AroK -
  K5R88_RS23235 (K5R88_23120) aroB 5080255..5081355 (+) 1101 WP_008041853.1 3-dehydroquinate synthase -
  K5R88_RS23240 (K5R88_23125) - 5081366..5082979 (+) 1614 WP_226298429.1 AAA family ATPase -

Sequence

Protein


Download         Length: 694 a.a.        Molecular weight: 74967.13 Da        Isoelectric Point: 5.3978

>NTDB_id=598599 K5R88_RS23225 WP_226298428.1 5077496..5079580(+) (pilQ) [Pseudomonas sp. MM213]
MNRIFATFGISLWIALLSPMVQAANLKALDVAALPGDRVELKLSFDGAPPAPHGYTTEQPARIALDLPGVVSQLASKTRD
LGGGNARSATVVEAKDRTRLIINLTQLTPYTARVEGNNLFVVVGRGGSNAAAPAARPSRVATATAAPAKAYAPASKAIRG
VDFQRGTQGEGNVVIDLSDPSIAPDIQERDGRIVLNFARTQLPEPLRVRLDVKDFATPVQFVNASATGDRAIISIEPSGA
FDYSTYQTDNKLTVSIRPMTVDDLQKRNAERFAYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQNV
PWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIADLAPLRRELLQVNYAKAADIAKLFTSVTSAEAK
VDERGSITVDDRTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSLQNKGNWNTSGVSN
GADASSTIGTPGSTSTNSPFVDMGAAANTSGLGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEI
PYQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVF
SNTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSH

Nucleotide


Download         Length: 2085 bp        

>NTDB_id=598599 K5R88_RS23225 WP_226298428.1 5077496..5079580(+) (pilQ) [Pseudomonas sp. MM213]
ATGAACAGGATTTTCGCAACCTTCGGTATTTCGCTATGGATAGCGTTGCTGTCGCCGATGGTACAAGCGGCCAACCTCAA
GGCGCTGGATGTTGCCGCGCTGCCGGGAGACCGCGTCGAGTTGAAGTTGTCATTCGATGGCGCGCCGCCGGCGCCCCACG
GTTACACGACGGAGCAGCCTGCGCGGATTGCGCTGGATCTGCCTGGCGTGGTCAGTCAGTTGGCGAGCAAGACCCGTGAT
CTTGGCGGCGGCAACGCCCGCAGCGCCACGGTGGTGGAAGCCAAGGACCGCACGCGGCTGATCATCAACCTGACTCAATT
GACCCCGTACACCGCACGGGTCGAAGGCAACAACCTGTTCGTTGTGGTCGGGCGGGGAGGCAGTAACGCTGCCGCGCCTG
CCGCCAGGCCTTCGCGGGTCGCCACGGCAACTGCGGCGCCGGCCAAGGCTTATGCGCCGGCGAGCAAGGCCATTCGCGGC
GTGGATTTCCAGCGTGGAACCCAAGGCGAAGGCAACGTGGTCATCGACCTGTCGGACCCTTCCATCGCCCCGGACATTCA
GGAGCGCGATGGCAGGATTGTCCTTAATTTTGCCAGAACCCAATTACCGGAACCTCTGCGAGTGCGCCTGGACGTCAAGG
ATTTCGCCACGCCGGTGCAGTTCGTCAACGCCAGCGCCACCGGTGACCGGGCGATCATCAGCATCGAGCCCAGCGGCGCC
TTCGATTACTCGACCTACCAGACCGACAATAAGCTCACCGTCAGCATTCGCCCGATGACCGTCGATGACCTGCAAAAGCG
CAACGCCGAACGTTTTGCGTACACCGGTGAAAAGCTCTCGCTGAACTTCCAGGACATTGACGTGCGCTCGGTGCTGCAAC
TGATCGCCGATTTCACCAACCTCAATCTGGTGGCCAGCGACACGGTGCAGGGCGGCATCACCTTGCGTCTGCAAAACGTG
CCATGGGATCAGGCGCTGGACCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGATCGGCAACGTGTTGCTGGTGGC
GCCGGCCGACGAGATTGCCGCGCGCGAACGTCAGGAGCTGGAGTCGCAGAAGCAGATTGCCGATCTGGCGCCATTGCGTC
GTGAGCTGCTGCAGGTCAATTACGCCAAGGCGGCGGATATCGCCAAGCTGTTCACGTCGGTGACCAGTGCCGAGGCAAAA
GTGGATGAGCGGGGTTCGATCACTGTCGATGACCGGACCAACAACATCATTGCCTATCAGACCCAGGATCGCCTCGACGA
GCTTCGCCGGATCGTCGCGCAACTGGACATCCCGGTGCGTCAGGTGATGATCGAGGCGCGAATCGTCGAAGCCAACGTCG
ACTATGACAAAAGCCTCGGCGTGCGCTGGGGTGGTTCGTTGCAGAACAAGGGCAACTGGAACACGTCCGGGGTCAGCAAC
GGCGCCGATGCTTCGTCGACCATCGGCACGCCTGGCAGCACCAGTACCAACTCGCCGTTCGTCGATATGGGCGCCGCCGC
CAATACCTCGGGGCTCGGCATCGCCTTCATCACCGACAATGTGCTGCTGGATCTTGAACTGACCGCCATGGAGAAGACCG
GCAACGGCGAAATCGTCTCACAGCCCAAAGTGGTCACGTCCGACAAGGAAACCGCAAAAATCCTCAAGGGCACCGAGATC
CCGTACCAGGAAGCCAGCTCCAGCGGCGCCACATCGGTGTCCTTCAAAGAGGCCTCGCTGTCGCTGGAAGTGACGCCGCA
GATCACCCCGGACAACCGGATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAGGTCCAGGATG
TACCGCCGATCAAGAAAAACGAGGTCAACGCCAAGGTCCTGGTCAATGACGGCGAGACCATCGTAATCGGTGGCGTTTTC
TCAAATACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTCGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGA
CGTGGTTTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAACAACCAGGCGATTGCTGTGAGTC
ATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(37-122)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-441)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II and III secretion system protein (Secretin)

(529-685)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

73.007

100

0.752
  comQ Acinetobacter baylyi ADP1

41.991

99.856

0.419
  pilQ Acinetobacter baumannii strain A118

38.247

100

0.415
  pilQ Acinetobacter baumannii D1279779

38.247

100

0.415
  pilQ Legionella pneumophila strain Lp02

38.109

97.55

0.372
  pilQ Legionella pneumophila strain ERS1305867

38.109

97.55

0.372