Detailed information    

insolico Bioinformatically predicted

Overview

Name   comM   Type   Machinery gene
Locus tag   K5R88_RS23205 Genome accession   NZ_CP081943
Coordinates   5074708..5075772 (+) Length   354 a.a.
NCBI ID   WP_226298425.1    Uniprot ID   -
Organism   Pseudomonas sp. MM213     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5069708..5080772
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K5R88_RS23195 (K5R88_23080) - 5070489..5071757 (+) 1269 WP_008025204.1 malic enzyme-like NAD(P)-binding protein -
  K5R88_RS23200 (K5R88_23085) - 5072054..5074492 (-) 2439 WP_226298424.1 penicillin-binding protein 1A -
  K5R88_RS23205 (K5R88_23090) comM 5074708..5075772 (+) 1065 WP_226298425.1 pilus assembly protein PilM Machinery gene
  K5R88_RS23210 (K5R88_23095) - 5075772..5076338 (+) 567 WP_226298426.1 PilN domain-containing protein -
  K5R88_RS23215 (K5R88_23100) pilO 5076335..5076958 (+) 624 WP_008041857.1 type 4a pilus biogenesis protein PilO -
  K5R88_RS23220 (K5R88_23105) - 5076955..5077482 (+) 528 WP_226298427.1 pilus assembly protein PilP -
  K5R88_RS23225 (K5R88_23110) pilQ 5077496..5079580 (+) 2085 WP_226298428.1 type IV pilus secretin PilQ Machinery gene
  K5R88_RS23230 (K5R88_23115) aroK 5079585..5080103 (+) 519 WP_032828585.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38024.42 Da        Isoelectric Point: 4.6907

>NTDB_id=598598 K5R88_RS23205 WP_226298425.1 5074708..5075772(+) (comM) [Pseudomonas sp. MM213]
MLGLFNKKANTLLGIDISSTSVKLLELSRQGDRYRVEAYAVEPLPANAVVEKNIAELEGVGQALSRVLLKARTSLKNVAV
AVAGSAVITKTIEMDAGLSDDELENQLKIEADQYIPYPLDEVAIDFEVQGVSARNPERVSVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLTGHLAASREDLTVAVVDIGATMTTLSVLRNGKIIYTREQLFGGRQLTEEIQRRYGLTV
EQAGLAKKQGGLPDDYVSEVLQPFRDALVQQVSRSLQFFFASGQYNSVDHILLAGGTASVPGLDRLIEERLGTSTQVANP
FSDMTLGSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=598598 K5R88_RS23205 WP_226298425.1 5074708..5075772(+) (comM) [Pseudomonas sp. MM213]
GTGCTAGGACTCTTCAATAAAAAAGCCAATACGCTTTTGGGGATCGACATCAGCTCCACGTCGGTGAAGCTGCTTGAGCT
TAGCCGCCAGGGCGACCGCTATCGGGTCGAGGCTTATGCGGTAGAACCGCTACCCGCCAACGCGGTGGTCGAGAAAAATA
TCGCCGAGCTCGAAGGCGTGGGTCAGGCCCTTTCACGCGTGCTGCTCAAGGCCAGAACCAGCCTCAAGAATGTGGCCGTT
GCCGTGGCCGGTTCTGCCGTCATCACCAAAACCATCGAAATGGATGCAGGTCTTTCCGACGACGAGCTGGAAAACCAGCT
GAAGATCGAGGCCGATCAATACATCCCTTATCCACTGGACGAAGTCGCCATCGACTTTGAAGTACAGGGCGTATCGGCAC
GCAACCCGGAACGGGTCAGTGTGCTGCTGGCAGCCTGTCGCAAGGAAAACGTCGAAGTCCGTGAAGCGGCGCTCGCACTG
GCCGGCCTGACGGCGCGCGTGGTCGATGTCGAGGCTTACGCGCTGGAGCGCTCATTCGGCCTGCTGACCGGGCATCTGGC
GGCGTCTCGCGAGGATCTGACGGTCGCCGTGGTCGACATCGGCGCGACCATGACCACCCTGAGCGTGCTGCGCAACGGGA
AAATCATCTACACCCGCGAACAGTTGTTCGGCGGTCGTCAACTGACGGAAGAAATCCAGCGGCGTTATGGCCTGACCGTT
GAGCAAGCGGGGCTGGCGAAGAAGCAGGGCGGTTTGCCGGACGATTACGTCAGCGAAGTGTTGCAGCCCTTCCGTGATGC
ACTGGTGCAGCAAGTGTCGCGTTCGTTGCAGTTTTTCTTCGCTTCCGGCCAGTACAACTCGGTCGACCATATCCTGTTGG
CTGGCGGCACCGCTTCGGTTCCGGGGCTGGACCGATTGATCGAGGAGCGTCTGGGCACTTCGACGCAAGTGGCCAATCCA
TTCTCCGACATGACCCTGGGCAGCAAGGTCAACGCCGGTGCCCTGGCCAGCGACGCGCCGGCGCTGATGATCGCCTGCGG
GTTAGCCCTCAGGAGCTTCGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comM Acinetobacter nosocomialis M2

56.497

100

0.565
  pilM Acinetobacter baumannii D1279779

56.215

100

0.562
  comM Acinetobacter baylyi ADP1

54.52

100

0.545
  pilM Legionella pneumophila strain ERS1305867

48.87

100

0.489