Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGD   Type   Machinery gene
Locus tag   M8286_RS00745 Genome accession   NZ_CP097577
Coordinates   121290..121697 (+) Length   135 a.a.
NCBI ID   WP_275601169.1    Uniprot ID   -
Organism   Streptococcus suis strain 3112     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 116290..126697
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  M8286_RS00720 (M8286_00715) - 117689..118063 (+) 375 WP_024385120.1 DUF1033 family protein -
  M8286_RS00725 (M8286_00720) - 118091..119041 (-) 951 WP_275601166.1 S66 peptidase family protein -
  M8286_RS00730 (M8286_00725) comGA 119127..120077 (+) 951 WP_275601167.1 competence type IV pilus ATPase ComGA Machinery gene
  M8286_RS00735 (M8286_00730) comGB 119989..121026 (+) 1038 WP_358639410.1 competence type IV pilus assembly protein ComGB Machinery gene
  M8286_RS00740 (M8286_00735) comGC 121028..121309 (+) 282 WP_275601168.1 competence type IV pilus major pilin ComGC Machinery gene
  M8286_RS00745 (M8286_00740) comGD 121290..121697 (+) 408 WP_275601169.1 competence type IV pilus minor pilin ComGD Machinery gene
  M8286_RS00750 (M8286_00745) comGE 121669..121962 (+) 294 WP_275601170.1 competence type IV pilus minor pilin ComGE Machinery gene
  M8286_RS00755 (M8286_00750) comGF/cglF 121949..122383 (+) 435 WP_275601171.1 competence type IV pilus minor pilin ComGF Machinery gene
  M8286_RS00760 (M8286_00755) comGG 122361..122879 (+) 519 WP_275601172.1 competence type IV pilus minor pilin ComGG -
  M8286_RS00765 (M8286_00760) comGH 122929..123882 (+) 954 WP_275601173.1 class I SAM-dependent methyltransferase Machinery gene
  M8286_RS00770 (M8286_00765) - 123932..125119 (+) 1188 WP_167787180.1 acetate kinase -
  M8286_RS00775 (M8286_00770) - 125434..125985 (+) 552 WP_275601174.1 folate family ECF transporter S component -

Sequence

Protein


Download         Length: 135 a.a.        Molecular weight: 15253.46 Da        Isoelectric Point: 9.9950

>NTDB_id=595679 M8286_RS00745 WP_275601169.1 121290..121697(+) (comGD) [Streptococcus suis strain 3112]
MLRRKNKAFTLFESLLTLFVVSFLAVSLSGTIQTAFRSVQEEIFLWEFEAIYKDSQKLAASSHQTVILSIGGQEVTNGHQ
AVQVPRNVEVLEGKTITFEENGGNSSLTKIRFRLSRKTVAYQLYIGSGRYKKTEE

Nucleotide


Download         Length: 408 bp        

>NTDB_id=595679 M8286_RS00745 WP_275601169.1 121290..121697(+) (comGD) [Streptococcus suis strain 3112]
ATGCTACGGCGAAAAAATAAGGCTTTCACCCTGTTTGAAAGCCTGCTGACCCTATTTGTCGTCAGTTTCTTAGCAGTTTC
CCTGTCGGGAACGATACAAACGGCCTTTCGGTCTGTTCAGGAAGAGATTTTTCTCTGGGAATTTGAAGCTATCTACAAAG
ACAGTCAGAAATTGGCAGCTAGTTCCCACCAAACAGTTATTCTTTCTATCGGTGGGCAGGAAGTGACGAATGGTCATCAA
GCGGTACAGGTACCCAGAAATGTAGAAGTATTGGAAGGGAAGACCATCACATTTGAAGAAAATGGTGGAAATTCTTCTCT
GACCAAGATTCGTTTTCGGCTTAGTCGAAAGACAGTCGCGTATCAATTATATATAGGGAGTGGTCGCTATAAGAAAACAG
AAGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGD Streptococcus mutans UA159

47.287

95.556

0.452
  comGD Streptococcus mutans UA140

47.287

95.556

0.452
  comGD/cglD Streptococcus pneumoniae R6

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae TIGR4

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae D39

45.736

95.556

0.437
  comGD/cglD Streptococcus pneumoniae Rx1

45.736

95.556

0.437
  comGD/cglD Streptococcus mitis NCTC 12261

44.961

95.556

0.43
  comGD/cglD Streptococcus mitis SK321

44.961

95.556

0.43
  comGD Streptococcus gordonii str. Challis substr. CH1

44.882

94.074

0.422
  comGD Lactococcus lactis subsp. cremoris KW2

38.281

94.815

0.363