Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   K3176_RS32695 Genome accession   NZ_CP081202
Coordinates   6843875..6844432 (-) Length   185 a.a.
NCBI ID   WP_221388731.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain P9W     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6838875..6849432
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3176_RS32680 (K3176_32680) pilY1 6838967..6842458 (-) 3492 WP_181268808.1 type 4a pilus biogenesis protein PilY1 -
  K3176_RS32685 (K3176_32685) pilX 6842470..6843057 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  K3176_RS32690 (K3176_32690) pilW 6843054..6843878 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  K3176_RS32695 (K3176_32695) pilV 6843875..6844432 (-) 558 WP_221388731.1 type IV pilus modification protein PilV Machinery gene
  K3176_RS32700 (K3176_32700) - 6844423..6844929 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  K3176_RS32705 (K3176_32705) - 6845035..6845544 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  K3176_RS32710 (K3176_32710) thiO 6845679..6846773 (+) 1095 WP_003145981.1 glycine oxidase ThiO -
  K3176_RS32715 (K3176_32715) pilR 6846819..6848156 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20160.29 Da        Isoelectric Point: 8.4756

>NTDB_id=595676 K3176_RS32695 WP_221388731.1 6843875..6844432(-) (pilV) [Pseudomonas aeruginosa strain P9W]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPRAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=595676 K3176_RS32695 WP_221388731.1 6843875..6844432(-) (pilV) [Pseudomonas aeruginosa strain P9W]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCACGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989