Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   K3176_RS32715 Genome accession   NZ_CP081202
Coordinates   6846819..6848156 (-) Length   445 a.a.
NCBI ID   WP_003094694.1    Uniprot ID   A0A0H2ZG94
Organism   Pseudomonas aeruginosa strain P9W     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 6841819..6853156
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  K3176_RS32685 (K3176_32685) pilX 6842470..6843057 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  K3176_RS32690 (K3176_32690) pilW 6843054..6843878 (-) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  K3176_RS32695 (K3176_32695) pilV 6843875..6844432 (-) 558 WP_221388731.1 type IV pilus modification protein PilV Machinery gene
  K3176_RS32700 (K3176_32700) - 6844423..6844929 (-) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  K3176_RS32705 (K3176_32705) - 6845035..6845544 (-) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  K3176_RS32710 (K3176_32710) thiO 6845679..6846773 (+) 1095 WP_003145981.1 glycine oxidase ThiO -
  K3176_RS32715 (K3176_32715) pilR 6846819..6848156 (-) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  K3176_RS32720 (K3176_32720) pilS 6848171..6849763 (-) 1593 WP_003119425.1 two-component system sensor histidine kinase PilS Regulator
  K3176_RS32725 (K3176_32725) - 6849753..6849998 (-) 246 WP_003102591.1 PP0621 family protein -
  K3176_RS32730 (K3176_32730) - 6850155..6851180 (-) 1026 WP_003102590.1 outer membrane protein assembly factor BamD -
  K3176_RS32735 (K3176_32735) rluD 6851326..6852288 (+) 963 WP_023911040.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  K3176_RS32740 (K3176_32740) pgeF 6852285..6853013 (+) 729 WP_003119426.1 peptidoglycan editing factor PgeF -

Sequence

Protein


Download         Length: 445 a.a.        Molecular weight: 49737.06 Da        Isoelectric Point: 5.8654

>NTDB_id=595677 K3176_RS32715 WP_003094694.1 6846819..6848156(-) (pilR) [Pseudomonas aeruginosa strain P9W]
MSRQKALIVDDEPDIRELLEITLGRMKLDTRSARNVKEARELLAREPFDLCLTDMRLPDGSGLDLVQYIQQRHPQTPVAM
ITAYGSLDTAIQALKAGAFDFLTKPVDLGRLRELVATALRLRNPEAEEAPVDNRLLGESPPMRALRNQIGKLARSQAPVY
ISGESGSGKELVARLIHEQGPRIERPFVPVNCGAIPSELMESEFFGHKKGSFTGAIEDKQGLFQAASGGTLFLDEVADLP
MAMQVKLLRAIQEKAVRAVGGQQEVAVDVRILCATHKDLAAEVGAGRFRQDLYYRLNVIELRVPPLRERREDIPLLAERI
LKRLAGDTGLPAARLTGDAQEKLKNYRFPGNVRELENMLERAYTLCEDDQIQPHDLRLADAPGASQEGAASLSEIDNLED
YLEDIERKLIMQALEETRWNRTAAAQRLGLTFRSMRYRLKKLGID

Nucleotide


Download         Length: 1338 bp        

>NTDB_id=595677 K3176_RS32715 WP_003094694.1 6846819..6848156(-) (pilR) [Pseudomonas aeruginosa strain P9W]
ATGAGCCGACAAAAAGCCCTGATCGTCGACGATGAACCGGATATCCGCGAACTGCTGGAAATCACTCTCGGCCGCATGAA
GCTGGACACCCGCAGCGCCCGCAACGTCAAGGAAGCCCGCGAGTTGCTGGCCCGCGAGCCGTTCGACCTGTGCCTCACCG
ACATGCGCCTGCCGGACGGCAGCGGCCTCGATCTGGTCCAGTACATCCAGCAGCGCCATCCACAGACCCCGGTGGCCATG
ATCACCGCGTACGGCAGCCTGGACACCGCGATCCAGGCGCTCAAGGCCGGTGCCTTCGACTTCCTCACCAAACCGGTCGA
CCTCGGTCGCTTGCGGGAGCTGGTGGCAACCGCCCTGCGCTTGCGCAACCCGGAAGCCGAGGAAGCGCCGGTGGACAACC
GCCTGCTCGGCGAGTCGCCGCCGATGCGCGCCCTGCGCAACCAGATCGGCAAGCTGGCGCGCAGCCAGGCGCCGGTCTAC
ATCAGTGGCGAGTCCGGTAGCGGCAAGGAGCTGGTGGCGCGCCTGATCCACGAGCAGGGGCCACGTATCGAGCGGCCGTT
CGTGCCGGTGAACTGCGGCGCGATTCCCTCCGAACTGATGGAAAGCGAGTTCTTCGGCCACAAGAAAGGCAGCTTCACTG
GCGCTATCGAAGACAAGCAGGGCCTGTTCCAGGCCGCCAGCGGCGGCACCCTGTTCCTCGACGAAGTCGCCGACCTGCCG
ATGGCCATGCAGGTCAAACTGCTCCGGGCGATCCAGGAAAAGGCCGTGCGCGCGGTCGGCGGCCAGCAGGAGGTCGCCGT
CGACGTGCGCATCCTCTGCGCCACCCACAAGGACCTCGCCGCCGAAGTCGGCGCCGGGCGCTTCCGCCAGGACCTCTACT
ACCGCCTCAACGTCATCGAGCTGCGCGTACCGCCGCTGCGCGAACGCCGCGAGGACATCCCGCTGCTCGCCGAACGCATC
CTCAAGCGCCTGGCCGGCGACACCGGCCTGCCGGCCGCCAGGCTGACCGGCGACGCACAGGAGAAGCTGAAGAACTACCG
CTTCCCGGGCAACGTCCGCGAGCTGGAAAACATGCTGGAGCGCGCCTACACCCTGTGCGAAGACGACCAGATCCAGCCTC
ACGACCTGCGCCTGGCCGATGCGCCGGGTGCCAGCCAGGAAGGCGCCGCGAGCCTGAGCGAAATAGACAACCTCGAGGAC
TACCTGGAAGACATCGAGCGCAAGCTGATCATGCAGGCGCTCGAGGAGACCCGCTGGAACCGCACCGCCGCGGCCCAGCG
CCTGGGCCTGACGTTCCGCTCGATGCGCTACCGCCTGAAAAAGCTGGGCATCGACTGA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(7-115)

Sigma-54 interaction domain (Sigma54_activat)

(135-301)

Bacterial regulatory protein, Fis family (HTH_8)

(402-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZG94

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

100

100

1
  pilR Acinetobacter baumannii strain A118

51.198

100

0.528
  luxO Vibrio cholerae strain A1552

38.17

100

0.384