NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	KTJ85_RS16430	Genome accession	NZ_CP080509
Coordinates	3218733..3219329 (+)	Length	198 a.a.
NCBI ID	WP_003151513.1	Uniprot ID	I2CAH7
Organism	Bacillus sp. 7D3
Function	degradation of ComK; degradation of DegU (predicted from homology) Competence regulation

Genomic Context

Location: 3213733..3224329

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KTJ85_RS16405 (KTJ85_16405)	-	3213778..3214089 (+)	312	WP_088613509.1	hypothetical protein	-
KTJ85_RS16415 (KTJ85_16415)	-	3214400..3215869 (-)	1470	WP_212099427.1	glycoside hydrolase family 32 protein	-
KTJ85_RS16420 (KTJ85_16420)	-	3215862..3217115 (-)	1254	WP_212101777.1	MFS transporter	-
KTJ85_RS16425 (KTJ85_16425)	-	3217486..3218460 (+)	975	WP_212099429.1	LacI family DNA-binding transcriptional regulator	-
KTJ85_RS16430 (KTJ85_16430)	clpP	3218733..3219329 (+)	597	WP_003151513.1	ATP-dependent Clp endopeptidase proteolytic subunit ClpP	Regulator
KTJ85_RS16435 (KTJ85_16435)	-	3219371..3219658 (-)	288	Protein_3249	LysR substrate-binding domain-containing protein	-
KTJ85_RS16440 (KTJ85_16440)	-	3220307..3220882 (-)	576	WP_013353716.1	TIGR00730 family Rossman fold protein	-
KTJ85_RS16445 (KTJ85_16445)	-	3220998..3221318 (+)	321	WP_065982407.1	MazG nucleotide pyrophosphohydrolase domain-containing protein	-
KTJ85_RS16450 (KTJ85_16450)	-	3221364..3222953 (-)	1590	WP_065982928.1	SulP family inorganic anion transporter	-
KTJ85_RS16455 (KTJ85_16455)	-	3222956..3223546 (-)	591	WP_088030702.1	carbonic anhydrase	-

Sequence

Protein

Download Length: 198 a.a. Molecular weight: 21831.06 Da Isoelectric Point: 4.6982

                                >NTDB_id=593421 KTJ85_RS16430 WP_003151513.1 3218733..3219329(+) (clpP) [Bacillus sp. 7D3]

MNLIPTVIEQTNRGERAYDIYSRLLKDRIIMLGSAIDDNVANSIVSQLLFLEAEDPEKDISIYINSPGGSITAGMAIYDT

MQFIKPKVSTICIGMAASMGAFLLAAGEKGKRYALPNSEVMIHQPLGGAQGQATEIEIAAKRILLLRDKLNKVLAERTGQ

PLEVIERDTDRDNFKSADEALEYGLIDKVLTRNTEDQK

Nucleotide

Download Length: 597 bp

                                >NTDB_id=593421 KTJ85_RS16430 WP_003151513.1 3218733..3219329(+) (clpP) [Bacillus sp. 7D3]

ATGAATTTAATACCTACAGTCATTGAACAAACGAACCGCGGAGAAAGAGCTTATGACATTTACTCCCGTCTTTTGAAGGA

CCGTATTATCATGCTTGGATCTGCGATTGATGACAACGTTGCAAACTCCATCGTGTCACAGCTTTTATTCCTTGAAGCGG

AAGACCCTGAAAAAGATATTTCCATTTACATTAACAGCCCTGGCGGATCAATCACTGCCGGTATGGCAATCTATGATACA

ATGCAGTTCATTAAACCGAAAGTATCCACGATCTGCATCGGTATGGCCGCTTCTATGGGAGCATTCTTACTTGCTGCCGG

AGAAAAAGGCAAACGTTACGCGCTTCCTAACAGTGAAGTCATGATTCACCAGCCGCTTGGCGGAGCGCAAGGACAGGCGA

CTGAAATTGAAATCGCGGCTAAACGCATTCTCTTGCTTCGTGATAAATTAAACAAAGTGCTTGCTGAACGTACCGGCCAG

CCGCTTGAAGTGATCGAGCGCGACACGGACCGCGACAACTTCAAATCAGCTGATGAAGCTTTAGAATACGGCTTAATCGA

TAAAGTGCTGACACGCAATACGGAAGACCAGAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(13-192)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure
AlphaFold DB	I2CAH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Bacillus subtilis subsp. subtilis str. 168	95.96	100	0.96
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	68.586	96.465	0.662
clpP	Streptococcus thermophilus LMG 18311	58.549	97.475	0.571
clpP	Streptococcus thermophilus LMD-9	58.549	97.475	0.571
clpP	Streptococcus pneumoniae D39	57.216	97.98	0.561
clpP	Streptococcus pneumoniae Rx1	57.216	97.98	0.561
clpP	Streptococcus pneumoniae R6	57.216	97.98	0.561
clpP	Streptococcus pneumoniae TIGR4	57.216	97.98	0.561
clpP	Lactococcus lactis subsp. cremoris KW2	56.701	97.98	0.556
clpP	Streptococcus pyogenes JRS4	55.44	97.475	0.54
clpP	Streptococcus pyogenes MGAS315	55.44	97.475	0.54
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	54.639	97.98	0.535
clpP	Streptococcus mutans UA159	54.639	97.98	0.535

Detailed information NTG0593421