Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   CA347_RS10050 Genome accession   NC_021554
Coordinates   2006271..2006741 (-) Length   156 a.a.
NCBI ID   WP_016528748.1    Uniprot ID   -
Organism   Staphylococcus aureus CA-347     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2001271..2011741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CA347_RS09980 (CA347_1930) - 2001442..2001645 (-) 204 WP_001072795.1 hypothetical protein -
  CA347_RS09985 (CA347_1931) - 2001642..2001836 (-) 195 WP_000132921.1 hypothetical protein -
  CA347_RS09990 (CA347_1932) - 2001833..2002039 (-) 207 WP_016528747.1 DUF1381 domain-containing protein -
  CA347_RS09995 (CA347_1933) - 2002076..2002585 (-) 510 WP_000185636.1 dUTP diphosphatase -
  CA347_RS10000 (CA347_1934) - 2002590..2002834 (-) 245 Protein_1909 DUF1024 family protein -
  CA347_RS10005 (CA347_1935) - 2002818..2003126 (-) 309 WP_000144711.1 hypothetical protein -
  CA347_RS10010 (CA347_1936) - 2003123..2003470 (-) 348 WP_000979209.1 YopX family protein -
  CA347_RS10015 (CA347_1937) - 2003467..2003868 (-) 402 WP_000695757.1 hypothetical protein -
  CA347_RS10020 (CA347_1938) - 2003871..2004077 (-) 207 WP_000693989.1 hypothetical protein -
  CA347_RS10025 (CA347_1939) - 2004092..2004334 (-) 243 WP_000131363.1 SAV1978 family virulence-associated passenger protein -
  CA347_RS10030 (CA347_1940) - 2004338..2004706 (-) 369 WP_000101289.1 SA1788 family PVL leukocidin-associated protein -
  CA347_RS10035 (CA347_1941) - 2004719..2005123 (-) 405 WP_000401960.1 RusA family crossover junction endodeoxyribonuclease -
  CA347_RS10040 (CA347_1942) - 2005132..2005350 (-) 219 WP_000338530.1 hypothetical protein -
  CA347_RS10045 (CA347_1943) - 2005357..2006241 (-) 885 WP_000148316.1 DnaD domain protein -
  CA347_RS10050 (CA347_1944) ssbA 2006271..2006741 (-) 471 WP_016528748.1 single-stranded DNA-binding protein Machinery gene
  CA347_RS10055 (CA347_1945) - 2006742..2007359 (-) 618 WP_073394849.1 MBL fold metallo-hydrolase -
  CA347_RS10060 (CA347_1946) - 2007440..2008360 (-) 921 WP_000138472.1 recombinase RecT -
  CA347_RS10065 (CA347_1947) - 2008362..2010305 (-) 1944 WP_016528749.1 AAA family ATPase -
  CA347_RS15085 - 2010314..2010577 (-) 264 WP_001205732.1 hypothetical protein -
  CA347_RS10070 (CA347_1948) - 2010586..2010846 (-) 261 WP_000291089.1 DUF1108 family protein -
  CA347_RS10075 (CA347_1949) - 2010940..2011101 (-) 162 WP_000066011.1 DUF1270 domain-containing protein -
  CA347_RS10080 (CA347_1950) - 2011094..2011315 (-) 222 WP_000594789.1 hypothetical protein -
  CA347_RS10085 (CA347_1952) - 2011386..2011616 (+) 231 WP_000395455.1 hypothetical protein -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 17627.49 Da        Isoelectric Point: 5.2672

>NTDB_id=59325 CA347_RS10050 WP_016528748.1 2006271..2006741(-) (ssbA) [Staphylococcus aureus CA-347]
MINRTILVGRLTRDPELRTTQSGVNVASFTLAVNRTFTNAQGEREADFINIIVFKKQAENVNKYLSKGSLAGVDGRLQTR
NYENKEGQRVYVTEVVADSIQFLEPKNSNDTQQDLYQQQVQQTRGQSQYSNNKPVKDNPFANANGPIELNDDDLPF

Nucleotide


Download         Length: 471 bp        

>NTDB_id=59325 CA347_RS10050 WP_016528748.1 2006271..2006741(-) (ssbA) [Staphylococcus aureus CA-347]
ATGATAAACAGAACAATATTAGTTGGTCGTTTAACTAGAGACCCAGAATTAAGAACCACTCAAAGTGGTGTAAATGTAGC
ATCATTCACATTAGCAGTTAACCGCACATTTACGAATGCACAAGGAGAGCGCGAGGCAGACTTTATTAATATCATCGTAT
TTAAAAAACAAGCAGAGAACGTTAATAAATACCTATCTAAAGGATCGTTGGCGGGCGTAGATGGTAGGTTACAAACGCGG
AACTATGAAAATAAGGAAGGTCAACGTGTATACGTTACGGAAGTTGTTGCCGATAGTATTCAATTTTTAGAACCGAAGAA
CTCAAATGACACTCAACAAGATTTATATCAACAACAAGTACAACAAACACGTGGACAATCGCAATATTCAAATAACAAAC
CAGTAAAAGATAATCCGTTTGCGAATGCAAATGGTCCGATTGAACTAAATGATGATGATTTACCATTCTGA

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

55.367

100

0.628
  ssb Latilactobacillus sakei subsp. sakei 23K

51.765

100

0.564
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.434

67.949

0.404
  ssb Glaesserella parasuis strain SC1401

32.768

100

0.372
  ssb Vibrio cholerae strain A1552

31.492

100

0.365
  ssb Neisseria meningitidis MC58

32.948

100

0.365
  ssb Neisseria gonorrhoeae MS11

32.948

100

0.365

Multiple sequence alignment