Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   MSA_RS03305 Genome accession   NC_021486
Coordinates   590707..590913 (+) Length   68 a.a.
NCBI ID   WP_016480484.1    Uniprot ID   -
Organism   Streptococcus agalactiae ILRI005     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 584352..600046 590707..590913 within 0


Gene organization within MGE regions


Location: 584352..600046
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MSA_RS11810 - 584352..584869 (+) 518 Protein_547 transposase -
  MSA_RS11695 (MSA_6640) - 584855..585235 (+) 381 Protein_548 hypothetical protein -
  MSA_RS03255 (MSA_6650) - 585246..585539 (+) 294 WP_016480474.1 hypothetical protein -
  MSA_RS03260 (MSA_6660) - 585542..585769 (+) 228 WP_016480475.1 phage holin -
  MSA_RS03265 (MSA_6680) - 585897..587231 (+) 1335 WP_016480477.1 GH25 family lysozyme -
  MSA_RS03270 (MSA_6690) - 587597..588109 (+) 513 WP_000634506.1 PBECR4 domain-containing protein -
  MSA_RS03275 (MSA_6700) - 588269..588469 (+) 201 WP_016480478.1 CsbD family protein -
  MSA_RS03280 (MSA_6710) - 588641..588871 (+) 231 WP_016480479.1 hypothetical protein -
  MSA_RS03285 (MSA_6720) - 588897..589322 (+) 426 WP_016480480.1 hypothetical protein -
  MSA_RS03290 (MSA_6730) - 589382..589759 (-) 378 WP_242367463.1 hypothetical protein -
  MSA_RS03295 (MSA_6740) - 589671..590213 (-) 543 WP_016480482.1 hypothetical protein -
  MSA_RS03300 (MSA_6750) - 590252..590491 (-) 240 WP_016480483.1 hypothetical protein -
  MSA_RS03305 (MSA_6760) prx 590707..590913 (+) 207 WP_016480484.1 hypothetical protein Regulator
  MSA_RS03310 (MSA_6770) - 590956..592374 (+) 1419 WP_016480485.1 C69 family dipeptidase -
  MSA_RS03315 (MSA_6780) - 592516..594036 (+) 1521 WP_001227406.1 zinc ABC transporter substrate-binding protein AdcA -
  MSA_RS03320 (MSA_6790) - 594149..594409 (-) 261 WP_000710757.1 type B 50S ribosomal protein L31 -
  MSA_RS03325 (MSA_6800) - 594518..595453 (-) 936 WP_016480486.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  MSA_RS03330 (MSA_6810) add 595719..596636 (+) 918 Protein_564 adenosine deaminase -
  MSA_RS11700 - 597896..598003 (+) 108 Protein_566 adenosine deaminase -
  MSA_RS03345 (MSA_6840) - 598062..598505 (+) 444 WP_016480489.1 flavodoxin -
  MSA_RS03350 (MSA_6850) - 598582..598857 (+) 276 WP_000418127.1 chorismate mutase -
  MSA_RS03355 (MSA_6860) - 598850..600046 (+) 1197 WP_016480490.1 voltage-gated chloride channel family protein -

Sequence

Protein


Download         Length: 68 a.a.        Molecular weight: 7760.91 Da        Isoelectric Point: 4.4488

>NTDB_id=59110 MSA_RS03305 WP_016480484.1 590707..590913(+) (prx) [Streptococcus agalactiae ILRI005]
MLYIDEFKEAIDKGYISGNTVAIVRKNGQIFDYVLPHEKVRDDEVVAVESVEEVLRELECSSVLCKVK

Nucleotide


Download         Length: 207 bp        

>NTDB_id=59110 MSA_RS03305 WP_016480484.1 590707..590913(+) (prx) [Streptococcus agalactiae ILRI005]
ATGTTATATATAGATGAGTTTAAAGAAGCGATTGATAAAGGCTATATTTCAGGGAACACAGTAGCGATTGTGCGCAAAAA
CGGACAGATTTTTGATTATGTGTTACCACACGAAAAAGTGAGAGATGATGAAGTTGTGGCAGTAGAGAGTGTAGAAGAAG
TGTTGAGGGAATTAGAGTGTTCATCGGTTTTGTGTAAAGTGAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS8232

75.862

85.294

0.647
  prx Streptococcus pyogenes MGAS315

74.576

86.765

0.647
  prx Streptococcus pyogenes MGAS315

68.966

85.294

0.588
  prx Streptococcus pyogenes MGAS315

67.797

86.765

0.588
  prx Streptococcus pyogenes MGAS315

93.023

63.235

0.588
  prx Streptococcus pyogenes MGAS315

82.927

60.294

0.5
  prx Streptococcus pyogenes MGAS315

76.19

61.765

0.471

Multiple sequence alignment