Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   KW556_RS19295 Genome accession   NZ_CP079823
Coordinates   4131795..4132115 (+) Length   106 a.a.
NCBI ID   WP_111900685.1    Uniprot ID   -
Organism   Aeromonas veronii strain HD6454     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4126795..4137115
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KW556_RS19280 (KW556_19200) yfbV 4127235..4127675 (-) 441 WP_005339116.1 terminus macrodomain insulation protein YfbV -
  KW556_RS19285 (KW556_19205) - 4127980..4129182 (+) 1203 WP_005349210.1 acetate kinase -
  KW556_RS19290 (KW556_19210) pta 4129237..4131417 (+) 2181 WP_005339119.1 phosphate acetyltransferase -
  KW556_RS19295 (KW556_19215) comEA/comE1 4131795..4132115 (+) 321 WP_111900685.1 ComEA family DNA-binding protein Machinery gene
  KW556_RS19300 (KW556_19220) galU 4132212..4133123 (+) 912 WP_259584055.1 UTP--glucose-1-phosphate uridylyltransferase GalU -
  KW556_RS19305 (KW556_19225) - 4133337..4134734 (+) 1398 WP_259584056.1 peptide MFS transporter -
  KW556_RS19310 (KW556_19230) - 4134809..4135780 (-) 972 WP_259584057.1 response regulator -
  KW556_RS19315 (KW556_19235) - 4136021..4136719 (+) 699 WP_236367583.1 DnaT-like ssDNA-binding domain-containing protein -

Sequence

Protein


Download         Length: 106 a.a.        Molecular weight: 11272.29 Da        Isoelectric Point: 9.9853

>NTDB_id=589801 KW556_RS19295 WP_111900685.1 4131795..4132115(+) (comEA/comE1) [Aeromonas veronii strain HD6454]
MLMKKLSAVMLLACLPLFSQPVLAVDKAAPKQTTTTAVAKESGKLNINTATLAELTSLKGIGDKKAQAIVDYREKQGKFT
SVDQLADVNGIGPATLEANRDMIIVK

Nucleotide


Download         Length: 321 bp        

>NTDB_id=589801 KW556_RS19295 WP_111900685.1 4131795..4132115(+) (comEA/comE1) [Aeromonas veronii strain HD6454]
ATGCTGATGAAGAAGCTCTCTGCTGTCATGCTGCTGGCCTGCTTGCCCCTGTTCAGCCAACCTGTGCTGGCCGTAGATAA
GGCAGCGCCCAAGCAAACAACCACGACCGCGGTTGCCAAGGAGTCCGGCAAGCTGAATATCAATACCGCCACCCTTGCCG
AACTCACCAGCCTGAAAGGGATTGGTGACAAGAAGGCACAAGCCATCGTCGACTATCGGGAAAAACAGGGAAAGTTCACC
TCGGTCGATCAGCTGGCGGATGTCAATGGCATTGGCCCGGCCACGCTGGAAGCCAACCGTGACATGATCATCGTCAAATA
A

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(42-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

46.018

100

0.491
  comEA Vibrio cholerae strain A1552

47.17

100

0.472
  comEA Vibrio cholerae C6706

47.17

100

0.472
  comEA Vibrio parahaemolyticus RIMD 2210633

43.299

91.509

0.396
  comE1/comEA Haemophilus influenzae Rd KW20

65.625

60.377

0.396
  comEA Acinetobacter baylyi ADP1

51.316

71.698

0.368
  comEA Legionella pneumophila strain ERS1305867

39.394

93.396

0.368
  comEA Legionella pneumophila str. Paris

39.394

93.396

0.368