Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   LPB404_RS08045 Genome accession   NZ_CP079821
Coordinates   1590598..1591188 (-) Length   196 a.a.
NCBI ID   WP_023024046.1    Uniprot ID   A0A428I0E7
Organism   Streptococcus rubneri strain LPB0404     
Function   degradation of ComX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1585598..1596188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS08020 (LPB404_08020) - 1586244..1587008 (-) 765 WP_023024036.1 ABC transporter ATP-binding protein -
  LPB404_RS08025 (LPB404_08025) - 1587008..1587955 (-) 948 WP_219074556.1 branched-chain amino acid ABC transporter permease -
  LPB404_RS08030 (LPB404_08030) - 1587959..1588828 (-) 870 WP_023024040.1 branched-chain amino acid ABC transporter permease -
  LPB404_RS08035 (LPB404_08035) - 1588910..1590067 (-) 1158 WP_023024042.1 ABC transporter substrate-binding protein -
  LPB404_RS08040 (LPB404_08040) - 1590161..1590445 (-) 285 WP_023024043.1 DUF2129 domain-containing protein -
  LPB404_RS08045 (LPB404_08045) clpP 1590598..1591188 (-) 591 WP_023024046.1 ATP-dependent Clp protease proteolytic subunit Regulator
  LPB404_RS08050 (LPB404_08050) upp 1591351..1591980 (-) 630 WP_023024048.1 uracil phosphoribosyltransferase -
  LPB404_RS08055 (LPB404_08055) mgtA 1592081..1594741 (-) 2661 WP_257573004.1 magnesium-translocating P-type ATPase -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21461.61 Da        Isoelectric Point: 5.0054

>NTDB_id=589773 LPB404_RS08045 WP_023024046.1 1590598..1591188(-) (clpP) [Streptococcus rubneri strain LPB0404]
MIPVVIEQTSRGERSYDIYSRLLKDRIIMVTGPVEDQMANSIIAQLLFLDAQDNTKDIYMYINTPGGSVSAGLAIVDTMN
FIKSDVQTIVMGMAASMGTVIASSGAKGKRFMLPNAEYMIHQPMGGTGGGTQQTDMAIAAEHLLKTRHRLEKILAENSGQ
TIKKIHADAERDNWMTAEETLAYGFIDEIMANNNLG

Nucleotide


Download         Length: 591 bp        

>NTDB_id=589773 LPB404_RS08045 WP_023024046.1 1590598..1591188(-) (clpP) [Streptococcus rubneri strain LPB0404]
ATGATTCCAGTAGTTATTGAACAAACCAGTCGTGGCGAACGCTCGTACGACATCTATTCCCGCTTATTAAAAGACCGTAT
TATCATGGTAACAGGACCGGTAGAAGATCAAATGGCCAATTCGATTATTGCCCAATTGCTCTTCTTGGATGCCCAAGATA
ATACCAAAGATATCTATATGTATATCAATACGCCAGGAGGCTCTGTCTCTGCAGGGTTGGCTATCGTCGATACCATGAAC
TTTATCAAATCAGACGTCCAAACTATTGTTATGGGGATGGCTGCTTCAATGGGAACTGTGATTGCATCAAGTGGTGCCAA
AGGCAAACGTTTCATGTTGCCAAATGCTGAGTACATGATCCACCAACCAATGGGTGGTACTGGTGGCGGTACTCAACAAA
CGGATATGGCCATTGCTGCAGAACACTTGTTGAAAACACGTCACAGATTGGAAAAAATCTTGGCAGAGAATTCAGGTCAA
ACCATCAAGAAAATCCATGCTGATGCAGAACGGGATAATTGGATGACTGCAGAAGAAACCTTAGCTTATGGTTTCATCGA
TGAAATCATGGCCAACAACAATCTTGGATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A428I0E7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Streptococcus pyogenes JRS4

91.795

99.49

0.913
  clpP Streptococcus pyogenes MGAS315

91.795

99.49

0.913
  clpP Streptococcus pneumoniae Rx1

91.282

99.49

0.908
  clpP Streptococcus pneumoniae D39

91.282

99.49

0.908
  clpP Streptococcus pneumoniae R6

91.282

99.49

0.908
  clpP Streptococcus pneumoniae TIGR4

91.282

99.49

0.908
  clpP Streptococcus thermophilus LMG 18311

89.744

99.49

0.893
  clpP Streptococcus thermophilus LMD-9

89.744

99.49

0.893
  clpP Streptococcus mutans UA159

88.718

99.49

0.883
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

84.103

99.49

0.837
  clpP Lactococcus lactis subsp. cremoris KW2

83.59

99.49

0.832
  clpP Bacillus subtilis subsp. subtilis str. 168

57.812

97.959

0.566
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.995

98.469

0.561