Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/celA/cilE   Type   Machinery gene
Locus tag   LPB404_RS04055 Genome accession   NZ_CP079821
Coordinates   787769..788446 (+) Length   225 a.a.
NCBI ID   WP_123160076.1    Uniprot ID   -
Organism   Streptococcus rubneri strain LPB0404     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 782769..793446
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LPB404_RS04035 (LPB404_04035) - 783329..783610 (-) 282 WP_023022665.1 GIY-YIG nuclease family protein -
  LPB404_RS04040 (LPB404_04040) - 783600..784346 (-) 747 WP_123159361.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LPB404_RS04045 (LPB404_04045) - 784446..786785 (-) 2340 WP_219075101.1 cation-translocating P-type ATPase -
  LPB404_RS04050 (LPB404_04050) - 786923..787666 (+) 744 WP_123160075.1 1-acyl-sn-glycerol-3-phosphate acyltransferase -
  LPB404_RS04055 (LPB404_04055) comEA/celA/cilE 787769..788446 (+) 678 WP_123160076.1 helix-hairpin-helix domain-containing protein Machinery gene
  LPB404_RS04060 (LPB404_04060) - 788430..790669 (+) 2240 Protein_751 DNA internalization-related competence protein ComEC/Rec2 -
  LPB404_RS04065 (LPB404_04065) - 790732..791397 (+) 666 WP_219075102.1 DUF805 domain-containing protein -
  LPB404_RS04070 (LPB404_04070) holA 791375..792412 (+) 1038 WP_219075210.1 DNA polymerase III subunit delta -
  LPB404_RS04075 (LPB404_04075) sodA 792484..793089 (+) 606 WP_048689195.1 superoxide dismutase SodA -

Sequence

Protein


Download         Length: 225 a.a.        Molecular weight: 24335.18 Da        Isoelectric Point: 4.5812

>NTDB_id=589757 LPB404_RS04055 WP_123160076.1 787769..788446(+) (comEA/celA/cilE) [Streptococcus rubneri strain LPB0404]
METWIEKIKEYKLFLGLAAVGLVVGGVFLFWPKPTPQAPETVISQLETVEQESSPKGDSSFTSSSQERSEEKTDSSHEKI
MVDVKGAVRQAGVYELPVGSRVYDAVQKAGGMTDEANSQSVNLAQKLEDESIVYVAKNGEEVAPVASASAGTTGGENQQK
DGKVNLNTATEVELQTISGIGQKRAQDIIAYREEKGKFQSVDELKNVSGIGQKTLEKLKEHVTVD

Nucleotide


Download         Length: 678 bp        

>NTDB_id=589757 LPB404_RS04055 WP_123160076.1 787769..788446(+) (comEA/celA/cilE) [Streptococcus rubneri strain LPB0404]
ATGGAGACATGGATTGAGAAAATCAAGGAATATAAACTGTTTTTAGGCTTGGCTGCTGTGGGGCTAGTGGTGGGAGGAGT
GTTCCTTTTTTGGCCTAAGCCAACCCCACAAGCGCCAGAAACAGTCATTTCCCAGTTAGAAACGGTGGAGCAAGAGAGTT
CTCCTAAGGGAGATTCAAGCTTTACTTCGAGCTCTCAGGAGAGAAGTGAGGAAAAGACCGACTCCTCGCATGAGAAAATC
ATGGTGGATGTGAAGGGAGCTGTCAGACAGGCGGGAGTCTATGAGCTTCCGGTGGGGAGTCGGGTCTATGATGCAGTGCA
AAAAGCAGGAGGGATGACAGACGAAGCCAATAGCCAATCTGTCAACTTGGCTCAAAAATTAGAGGATGAGTCTATCGTCT
ATGTTGCTAAGAATGGAGAAGAAGTAGCGCCTGTTGCGTCTGCTTCTGCAGGGACGACAGGTGGTGAAAACCAGCAAAAG
GATGGCAAGGTTAATCTCAATACAGCCACAGAAGTAGAATTACAGACTATTTCTGGGATTGGTCAAAAACGAGCTCAGGA
TATCATTGCTTATCGAGAGGAAAAAGGAAAATTTCAATCTGTTGATGAATTGAAAAATGTTTCTGGGATTGGCCAAAAGA
CACTAGAAAAGTTAAAAGAGCATGTTACAGTGGATTAG

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(161-223)

SLBB domain (SLBB)

(81-133)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/celA/cilE Streptococcus mitis NCTC 12261

52.423

100

0.529
  comEA/celA/cilE Streptococcus pneumoniae R6

50.22

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae Rx1

50.22

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae D39

50.22

100

0.507
  comEA/celA/cilE Streptococcus pneumoniae TIGR4

50.442

100

0.507
  comEA/celA/cilE Streptococcus mitis SK321

50

100

0.502
  comEA Streptococcus thermophilus LMD-9

44.737

100

0.453
  comEA Lactococcus lactis subsp. cremoris KW2

39.474

100

0.4