Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HV822_RS10820 Genome accession   NZ_CP079801
Coordinates   2347858..2349969 (+) Length   703 a.a.
NCBI ID   WP_275419351.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2342858..2354969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS10800 (HV822_10780) pilM 2345054..2346118 (+) 1065 WP_238869994.1 pilus assembly protein PilM Machinery gene
  HV822_RS10805 (HV822_10785) - 2346118..2346696 (+) 579 WP_238869995.1 PilN domain-containing protein -
  HV822_RS10810 (HV822_10790) - 2346693..2347316 (+) 624 WP_238869996.1 type 4a pilus biogenesis protein PilO -
  HV822_RS10815 (HV822_10795) pilP 2347313..2347837 (+) 525 WP_238869997.1 type 4a pilus biogenesis lipoprotein PilP -
  HV822_RS10820 (HV822_10800) pilQ 2347858..2349969 (+) 2112 WP_275419351.1 type IV pilus secretin PilQ Machinery gene
  HV822_RS10825 (HV822_10805) aroK 2349975..2350484 (+) 510 WP_238869998.1 shikimate kinase AroK -
  HV822_RS10830 (HV822_10810) aroB 2350554..2351630 (+) 1077 WP_238873590.1 3-dehydroquinate synthase -
  HV822_RS10835 (HV822_10815) - 2351630..2353162 (+) 1533 WP_238869999.1 AAA family ATPase -

Sequence

Protein


Download         Length: 703 a.a.        Molecular weight: 75492.30 Da        Isoelectric Point: 4.4885

>NTDB_id=589567 HV822_RS10820 WP_275419351.1 2347858..2349969(+) (pilQ) [Halopseudomonas maritima strain RR6]
MNCKQSRVERKKMLLTRKLPLAALMALLSPLALAADLQGMDVASLPGDRVELKLSFDEPVSAAPKGYTIDQPARIALDLP
GVQNKLGERSRELGLGNARSVTIVEAGDRTRLIINLTSLAPYNTRVQGNDLYVTVGAEAGVSASTSASVAPAAANSNWRA
SDEPAVSSSAAVGGRAISSLDFQRGTDGSGNVIIDLTDPGIKVDVEEQGGRVKLNFPNTRLPDALRVQLDVKDFATPVNF
VNATGSGNNASIVIEPTGSYEHLVYQADNRLTVSFKPLTPAEVEQRRADAFTYTGEKLSLNFQDIEVRSVLQLIADFTDL
NLVASDTVQGSITLRLQNVPWDQALDLVLKTKGLDKRQIGNVLLVAPAEEIAARERQELESQKQIAELAPLRRELIQVNY
AKASDIAQLFASVTSADADSQRGSLTVDERTNSIIALETQDKLDELRRIVTQLDIPVRQVMIEARIVEANVGFDKAIGVN
WSGEFSLGDSDRYRVYGDDGLASTASTPFVDMGVIGATSGIGIGFVTDNSMLDLQLSAMESTGNGEVISQPKVVTSDKET
AKILKGSEIPYQEASSSGATTTAFAEAVLSLEVTPQITPDNQVIMEVIVTKDEPDFTNEVNGVPTIRKNEVNANILVADG
ETIVIGGVFSSETQTSQEKVPFLGDLPILGKAFRRDVKAESKSELLIFLTPRIINNGAVSLAR

Nucleotide


Download         Length: 2112 bp        

>NTDB_id=589567 HV822_RS10820 WP_275419351.1 2347858..2349969(+) (pilQ) [Halopseudomonas maritima strain RR6]
ATGAACTGCAAACAGTCACGCGTGGAACGCAAAAAAATGCTTCTGACCAGAAAACTTCCGCTCGCAGCGCTGATGGCGTT
GCTGAGCCCGCTGGCCCTGGCCGCCGACCTGCAAGGCATGGACGTGGCATCACTGCCAGGTGACCGTGTTGAGTTAAAGC
TGAGTTTTGACGAGCCTGTCAGCGCAGCTCCCAAGGGGTACACTATCGATCAGCCGGCACGTATTGCCCTTGATTTGCCT
GGTGTGCAGAACAAGCTGGGCGAACGCTCTCGCGAGCTGGGACTGGGTAATGCGCGCAGCGTTACTATCGTTGAGGCGGG
AGATCGTACGCGCCTGATTATTAACCTGACATCCCTCGCACCTTACAACACGCGCGTTCAGGGTAATGACCTGTACGTGA
CTGTTGGCGCAGAGGCCGGAGTGTCCGCGTCAACGTCGGCGTCTGTGGCGCCTGCGGCTGCCAACAGCAACTGGCGAGCC
AGTGATGAGCCGGCGGTGTCCAGTTCGGCCGCCGTGGGTGGTCGTGCTATCAGTAGCCTCGACTTTCAGCGCGGCACCGA
CGGCTCAGGCAATGTCATCATCGATCTGACCGATCCCGGCATCAAGGTTGACGTTGAAGAGCAGGGCGGGCGCGTAAAGC
TCAACTTCCCCAACACGCGACTGCCGGACGCGCTGCGTGTTCAGTTGGATGTCAAAGATTTTGCGACTCCGGTGAACTTC
GTAAACGCGACGGGCAGTGGTAACAATGCGTCAATCGTGATTGAACCGACCGGTAGTTACGAGCACTTGGTCTATCAGGC
GGATAATCGTCTCACGGTAAGCTTCAAGCCGCTTACCCCCGCGGAGGTCGAGCAGCGTCGCGCTGACGCCTTTACCTACA
CCGGTGAAAAGCTGTCGCTGAACTTCCAAGATATCGAAGTGCGTTCGGTGTTGCAGCTGATCGCGGATTTCACTGATCTG
AACCTGGTGGCCAGTGATACGGTGCAAGGCAGTATTACGCTGCGCCTGCAGAACGTGCCATGGGATCAGGCGCTTGATCT
TGTGCTGAAAACCAAGGGCTTGGACAAGCGGCAGATCGGTAATGTCTTGCTGGTTGCTCCGGCGGAGGAGATTGCTGCAC
GCGAGCGCCAGGAGCTGGAATCGCAGAAGCAAATCGCAGAGTTGGCACCGTTGCGTCGCGAGCTGATTCAAGTCAACTAC
GCCAAGGCTAGCGATATTGCGCAGCTATTTGCCTCGGTTACCTCGGCTGATGCGGATAGCCAGCGCGGTTCGCTGACCGT
AGATGAGCGAACTAACAGCATTATTGCTTTGGAAACCCAAGACAAGTTGGATGAGCTGCGTCGCATTGTCACTCAGCTGG
ATATTCCGGTGCGTCAGGTCATGATCGAGGCGCGTATCGTCGAGGCGAATGTGGGCTTTGACAAGGCCATTGGGGTTAAC
TGGAGCGGTGAATTCAGCCTGGGAGACAGTGACAGGTATCGGGTTTATGGGGATGATGGATTGGCGTCTACTGCCAGCAC
GCCCTTTGTTGATATGGGTGTTATTGGGGCGACGTCAGGTATCGGCATCGGTTTTGTAACTGATAACTCAATGCTTGATC
TGCAATTGTCGGCAATGGAGAGCACTGGTAACGGCGAAGTTATTTCTCAGCCAAAGGTGGTTACGTCCGACAAAGAAACC
GCCAAAATCCTGAAAGGCTCCGAAATTCCTTATCAAGAGGCTAGTTCCAGTGGTGCTACTACCACTGCGTTCGCCGAGGC
GGTTCTCTCGCTCGAAGTGACTCCGCAGATTACTCCGGATAACCAGGTAATCATGGAAGTCATCGTCACCAAAGACGAGC
CTGACTTTACCAACGAGGTTAACGGTGTGCCGACCATTCGTAAGAACGAGGTGAATGCTAATATTCTGGTTGCGGACGGC
GAGACTATCGTTATCGGTGGTGTGTTCTCCAGCGAAACCCAGACATCTCAGGAGAAGGTGCCGTTCTTGGGGGATCTTCC
CATTTTAGGCAAAGCGTTCCGTCGTGATGTGAAGGCAGAGAGTAAAAGCGAGTTGCTGATCTTTCTGACGCCGCGCATCA
TCAACAACGGGGCTGTCTCCCTTGCTAGGTAA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(395-459)

Secretin and TonB N terminus short domain (STN)

(321-367)

AMIN domain (AMIN)

(53-134)

Bacterial type II and III secretion system protein (Secretin)

(538-694)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

67.275

100

0.681
  comQ Acinetobacter baylyi ADP1

40.571

99.573

0.404
  pilQ Acinetobacter baumannii strain A118

37.954

100

0.401
  pilQ Acinetobacter baumannii D1279779

37.954

100

0.401
  pilQ Legionella pneumophila strain ERS1305867

38.643

96.444

0.373
  pilQ Legionella pneumophila strain Lp02

38.643

96.444

0.373