Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   HV822_RS10800 Genome accession   NZ_CP079801
Coordinates   2345054..2346118 (+) Length   354 a.a.
NCBI ID   WP_238869994.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2340054..2351118
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS10790 (HV822_10770) - 2341568..2342515 (+) 948 WP_238869992.1 LysR family transcriptional regulator -
  HV822_RS10795 (HV822_10775) - 2342473..2344869 (-) 2397 WP_238869993.1 penicillin-binding protein 1A -
  HV822_RS10800 (HV822_10780) pilM 2345054..2346118 (+) 1065 WP_238869994.1 pilus assembly protein PilM Machinery gene
  HV822_RS10805 (HV822_10785) - 2346118..2346696 (+) 579 WP_238869995.1 PilN domain-containing protein -
  HV822_RS10810 (HV822_10790) - 2346693..2347316 (+) 624 WP_238869996.1 type 4a pilus biogenesis protein PilO -
  HV822_RS10815 (HV822_10795) pilP 2347313..2347837 (+) 525 WP_238869997.1 type 4a pilus biogenesis lipoprotein PilP -
  HV822_RS10820 (HV822_10800) pilQ 2347858..2349969 (+) 2112 WP_275419351.1 type IV pilus secretin PilQ Machinery gene
  HV822_RS10825 (HV822_10805) aroK 2349975..2350484 (+) 510 WP_238869998.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 37908.31 Da        Isoelectric Point: 4.2290

>NTDB_id=589566 HV822_RS10800 WP_238869994.1 2345054..2346118(+) (pilM) [Halopseudomonas maritima strain RR6]
MLGLLKKKANTLLGIDVSSTTVKLLELSRAGGRYKVEAYAVEPLPPGAVVEKNIVELEGVGQALEKVLARSRSPLKQAAV
AVAGSAVITKTIEMDAGLDPDEMEEQIKLEADQYIPYPLDEVAIDFEVQGPSPRNPEREEVLLAACRRENVDIREAALAL
AGLTASIVEVEAYAMERACELVVGQLDADDEGLTIAVIDIGATMMTLSVLSGGRTIYTREQLFGGKQLTDEIQRRYGLSQ
EEAGLAKKQGGLPDDYESEVLGPFKDAVVQQVSRSLQFFFAGGQYNDVDYILLAGGTASIPGLDQLVQQKIGTTTLVANP
FANMTLSNKVDAVALSNDAPALMIACGLAMRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=589566 HV822_RS10800 WP_238869994.1 2345054..2346118(+) (pilM) [Halopseudomonas maritima strain RR6]
GTGCTAGGGCTCCTAAAGAAAAAAGCGAACACGCTGCTGGGCATCGATGTCAGCTCCACCACGGTGAAGCTGCTGGAGCT
CAGTCGCGCCGGAGGCCGCTACAAGGTTGAAGCCTATGCGGTCGAACCCTTGCCACCCGGAGCGGTGGTCGAGAAAAATA
TCGTCGAGCTTGAAGGCGTTGGCCAAGCACTTGAAAAAGTGCTCGCGCGATCCAGGTCGCCACTCAAGCAAGCCGCCGTC
GCCGTCGCCGGATCTGCAGTGATCACCAAGACCATTGAGATGGACGCTGGTCTTGATCCCGACGAGATGGAAGAGCAAAT
CAAGCTCGAAGCCGATCAGTATATTCCCTACCCCCTCGATGAAGTCGCGATCGACTTCGAAGTGCAGGGGCCATCCCCCC
GAAACCCTGAGCGCGAAGAAGTGCTGCTGGCCGCCTGTCGTCGTGAGAACGTCGATATTCGCGAGGCTGCGCTGGCGTTG
GCTGGGCTCACAGCCAGCATCGTGGAGGTCGAGGCCTATGCGATGGAGCGGGCGTGCGAGCTGGTGGTTGGGCAGCTGGA
TGCTGATGATGAAGGGCTCACGATCGCGGTGATTGATATCGGTGCAACCATGATGACGCTCAGTGTTCTGAGCGGCGGTC
GCACCATCTACACACGCGAGCAACTGTTTGGTGGTAAGCAGCTCACCGACGAGATTCAGCGCCGCTATGGCCTGTCTCAG
GAAGAAGCTGGTCTTGCCAAGAAGCAGGGCGGTCTGCCGGATGATTACGAGTCTGAGGTGCTCGGGCCTTTCAAGGACGC
GGTGGTTCAGCAGGTGTCCCGATCGCTGCAGTTCTTCTTCGCCGGCGGTCAGTATAACGACGTGGACTACATTCTGCTGG
CTGGCGGCACCGCTTCTATCCCCGGTCTGGACCAATTGGTGCAGCAGAAAATCGGAACCACCACCCTGGTTGCCAACCCC
TTTGCAAACATGACCCTGTCCAACAAGGTTGACGCAGTTGCCCTGAGCAACGACGCGCCAGCATTGATGATCGCATGTGG
TCTGGCAATGAGGAGTTTTGACTGA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.932

100

0.559
  comM Acinetobacter nosocomialis M2

55.932

100

0.559
  comM Acinetobacter baylyi ADP1

52.26

100

0.523
  pilM Legionella pneumophila strain ERS1305867

44.915

100

0.449