Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   HV822_RS04560 Genome accession   NZ_CP079801
Coordinates   985552..986811 (+) Length   419 a.a.
NCBI ID   WP_238872582.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Genomic island 977085..986811 985552..986811 within 0


Gene organization within MGE regions


Location: 977085..986811
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS04520 (HV822_04525) - 977085..978083 (-) 999 WP_238872577.1 alpha-2,8-polysialyltransferase family protein -
  HV822_RS04525 (HV822_04530) - 978099..979397 (-) 1299 WP_238872578.1 lipopolysaccharide biosynthesis protein -
  HV822_RS04530 (HV822_04535) - 979372..980313 (-) 942 WP_238872579.1 glycosyltransferase family 2 protein -
  HV822_RS04535 (HV822_04540) - 980329..981177 (-) 849 WP_238872580.1 glycosyltransferase family 2 protein -
  HV822_RS04540 (HV822_04545) - 981174..983093 (-) 1920 WP_238872581.1 hypothetical protein -
  HV822_RS18150 (HV822_04550) - 983168..983578 (-) 411 WP_275419408.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  HV822_RS04555 (HV822_04555) pilB 983848..985548 (+) 1701 WP_238873536.1 type IV-A pilus assembly ATPase PilB Machinery gene
  HV822_RS04560 (HV822_04560) pilC 985552..986811 (+) 1260 WP_238872582.1 type II secretion system F family protein Machinery gene

Sequence

Protein


Download         Length: 419 a.a.        Molecular weight: 45724.38 Da        Isoelectric Point: 9.4060

>NTDB_id=589553 HV822_RS04560 WP_238872582.1 985552..986811(+) (pilC) [Halopseudomonas maritima strain RR6]
MAQQAALKKNPAAAKKAKEEKLYPFKWEGKDRKGTKMSGEIQGSNAALVKNQLRKQGILVTRVSRKSTLFGKRAKPIKPL
DIAFFTRQLATMMESGVPIIQAFEIIAEGADNPNVAKLVTEIKTDVAAGNTLADSLRQHPRYFDDLFCNLVESGEQSGRL
EALLDRIATYKEKTEALKAKIKKAMTYPIAVIVVAVIVTAIMLLKVVPSFQEVFANFGAELPAFTLFVIGLSEWLQAWWF
IALVLIIAAGYAYSQAHRRSKAFRDFEDRSLLKAPVVGEIVYQAAVARYARTLSTTFAAGVPLVDALDSVAGAAGNVVFY
NAVMKIKEDVSAGSQLNFSMRATNVFPSLATQMAGIGEESGNLDGMLEKVADYYEAEVDNKVDNLTTLLEPLIMCVLGVL
VGGLIIAMYLPIFQLGNVV

Nucleotide


Download         Length: 1260 bp        

>NTDB_id=589553 HV822_RS04560 WP_238872582.1 985552..986811(+) (pilC) [Halopseudomonas maritima strain RR6]
ATGGCGCAACAAGCAGCACTCAAAAAGAACCCTGCCGCCGCCAAAAAGGCCAAGGAAGAAAAGCTGTACCCCTTCAAATG
GGAGGGCAAAGACCGCAAAGGCACAAAGATGTCAGGCGAGATCCAGGGCTCTAATGCCGCGCTAGTGAAAAACCAGCTAC
GCAAGCAGGGGATCCTGGTCACAAGAGTCAGCCGCAAATCAACACTGTTTGGCAAACGCGCGAAGCCGATCAAGCCCCTG
GACATCGCTTTCTTTACCCGGCAGCTTGCCACCATGATGGAGTCCGGCGTACCCATCATTCAAGCGTTTGAGATTATTGC
GGAAGGCGCTGACAACCCCAACGTGGCGAAGCTCGTTACAGAGATCAAGACAGATGTGGCGGCCGGTAACACTTTGGCCG
ACTCACTGCGCCAGCACCCCAGGTACTTTGACGACCTATTCTGCAATCTCGTTGAGTCAGGCGAGCAGTCCGGTAGATTG
GAAGCTTTGCTTGACAGAATCGCCACATATAAAGAGAAAACCGAAGCACTCAAGGCAAAAATCAAAAAGGCGATGACCTA
TCCGATTGCGGTAATCGTAGTGGCCGTGATCGTAACAGCGATCATGCTCCTCAAAGTCGTCCCCAGCTTCCAAGAAGTAT
TCGCGAATTTCGGTGCAGAACTGCCAGCATTTACCCTATTCGTAATCGGTTTATCTGAATGGTTACAAGCCTGGTGGTTT
ATTGCCTTGGTTTTGATCATTGCGGCAGGGTACGCCTACAGCCAAGCACACCGGCGGTCCAAGGCTTTTCGCGACTTTGA
AGATCGCTCTCTGCTCAAAGCCCCGGTAGTCGGAGAGATCGTTTATCAGGCAGCCGTGGCCCGCTATGCACGGACACTTT
CCACTACTTTTGCAGCAGGCGTACCTTTGGTGGATGCGCTCGATTCGGTGGCAGGCGCCGCGGGAAACGTTGTGTTCTAC
AACGCCGTGATGAAGATCAAGGAAGATGTTTCCGCAGGCTCCCAGCTGAACTTTTCAATGCGCGCGACCAATGTATTCCC
CTCCCTCGCCACCCAAATGGCAGGGATTGGTGAGGAGTCCGGCAACCTTGATGGCATGCTGGAAAAGGTCGCGGACTACT
ACGAAGCTGAGGTGGATAACAAGGTAGACAACCTAACCACACTGCTTGAACCTCTAATCATGTGTGTACTCGGTGTCCTG
GTTGGCGGTCTGATCATCGCCATGTACCTCCCCATCTTCCAGCTCGGTAACGTCGTCTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(85-208)

Type II secretion system (T2SS), protein F (T2SSF)

(290-411)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Pseudomonas stutzeri DSM 10701

69.873

94.272

0.659
  pilC Acinetobacter baylyi ADP1

59.36

96.897

0.575
  pilC Acinetobacter baumannii D1279779

59.259

96.659

0.573
  pilC Legionella pneumophila strain ERS1305867

52.882

95.227

0.504
  pilG Neisseria meningitidis 44/76-A

43.478

98.807

0.43
  pilG Neisseria gonorrhoeae MS11

43.237

98.807

0.427
  pilC Vibrio campbellii strain DS40M4

41.935

96.181

0.403
  pilC Vibrio cholerae strain A1552

41.604

95.227

0.396