Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   HV822_RS04385 Genome accession   NZ_CP079801
Coordinates   940891..942483 (+) Length   530 a.a.
NCBI ID   WP_238872551.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 935891..947483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS04365 (HV822_04365) rluD 936516..937475 (-) 960 WP_238872547.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  HV822_RS04370 (HV822_04370) - 937656..938645 (+) 990 WP_238872548.1 outer membrane protein assembly factor BamD -
  HV822_RS04375 (HV822_04375) - 938907..940538 (-) 1632 WP_238872549.1 NAD+ synthase -
  HV822_RS04380 (HV822_04380) - 940668..940910 (+) 243 WP_238872550.1 PP0621 family protein -
  HV822_RS04385 (HV822_04385) pilS 940891..942483 (+) 1593 WP_238872551.1 nitrogen regulation protein NR(II) Regulator
  HV822_RS04390 (HV822_04390) pilR 942521..943864 (+) 1344 WP_238872552.1 sigma-54 dependent transcriptional regulator Regulator
  HV822_RS04395 (HV822_04395) thiO 943877..944971 (-) 1095 WP_238872553.1 glycine oxidase ThiO -
  HV822_RS04400 (HV822_04400) mqo 945415..946896 (+) 1482 WP_238872554.1 malate dehydrogenase (quinone) -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58849.92 Da        Isoelectric Point: 7.7802

>NTDB_id=589549 HV822_RS04385 WP_238872551.1 940891..942483(+) (pilS) [Halopseudomonas maritima strain RR6]
MHTVIAERVDSQRPRILRLYNLYRVILGFGLTLLTSAALREGVLSVSDANVYAKASWIYLFINVLIALSLHRGRRDLHMF
VLAVLDIGLLGVIFYAAGGIGSGFGNLLIIPVAIGNVLLHGRIGLLLPALASLVLIYLTFFLSLTHPYSGQSYLQAGVLG
AIYFAVAMFVQRVSRRLYLSEVLAREQAASLASMEQLNQLIIQRMRTGILVVADDHRIVTRNEACTQMLGGELSSGAKLE
HASPELEQRLRQWQRNPSVRGTAFHSHSGGTELMANFKPLGETSKGSILIFLDDNTQVAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLNESDLLSRQDLRLTEIIQQHSQRMNRVIETVLELSRRRPSEPQLVDLALWTSGFLQDFRAAHPLT
DSIDCEIEKEGILTRIDPNQLTQVVSNLCQNALRYSGEPGSERTIYLRLYLHPDTQLPILEIIDRGPGVPSEHVGHIFEP
FYTTENSGTGLGLYISRELCESNQARLECDSAQPRGCCMRITFAHPKRLV

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=589549 HV822_RS04385 WP_238872551.1 940891..942483(+) (pilS) [Halopseudomonas maritima strain RR6]
ATGCACACCGTCATCGCTGAGCGGGTCGACTCGCAGCGCCCCCGCATTCTGCGGCTGTACAACCTCTACCGGGTAATTCT
GGGCTTCGGCCTGACACTGCTCACCAGCGCTGCGCTGCGCGAAGGCGTACTGTCGGTGAGCGATGCCAACGTGTACGCCA
AGGCCAGCTGGATCTACCTGTTTATCAACGTGCTGATCGCCCTGTCGCTACACCGTGGCCGCCGCGACCTGCACATGTTT
GTTCTTGCGGTGCTGGATATCGGCCTGCTGGGCGTGATCTTTTACGCCGCGGGCGGGATTGGCAGCGGTTTCGGCAACCT
GCTGATCATCCCGGTCGCCATTGGCAACGTACTACTGCACGGACGCATTGGCCTGTTGCTGCCTGCACTGGCCAGCCTGG
TACTGATTTACCTGACGTTTTTCCTTAGTCTGACCCATCCCTACAGCGGCCAGAGCTATCTGCAGGCAGGGGTACTGGGC
GCCATCTACTTCGCGGTGGCCATGTTCGTGCAACGCGTCAGTCGTCGCTTGTACCTGTCTGAAGTGTTGGCCCGCGAGCA
GGCCGCCAGCCTGGCCAGCATGGAGCAGCTCAACCAGTTGATCATCCAGCGCATGCGTACCGGCATCCTGGTGGTAGCCG
ACGATCATCGTATCGTCACCCGCAACGAGGCCTGCACGCAGATGCTGGGCGGCGAATTAAGCAGCGGCGCCAAGTTGGAG
CACGCCTCCCCGGAGCTGGAGCAACGCTTGCGCCAGTGGCAGCGCAACCCTTCGGTCCGCGGTACTGCGTTCCACAGTCA
CAGTGGCGGCACCGAACTGATGGCCAACTTCAAGCCACTGGGCGAAACCAGCAAGGGCAGCATCCTGATCTTTCTGGACG
ACAATACCCAGGTGGCACAGCAAGCCCAGCAGCTGAAACTCGCCTCGCTGGGGCGCCTGACGGCCAGCATTGCGCACGAG
ATTCGCAACCCGCTAGGTGCCATCAGCCACGCAGCGCAATTGTTGAACGAATCCGACCTGCTTTCGCGTCAAGATCTGCG
CCTGACCGAAATCATCCAGCAGCATTCACAACGTATGAACCGGGTGATCGAGACGGTGCTTGAGCTGTCCCGCAGGCGCC
CCAGTGAGCCGCAACTGGTCGACCTGGCACTGTGGACTTCCGGCTTCCTGCAGGACTTTCGTGCTGCCCACCCGCTGACC
GACAGCATCGACTGCGAGATCGAGAAAGAAGGCATTCTCACCCGGATAGACCCCAATCAGTTGACCCAGGTGGTCAGCAA
CCTGTGTCAGAACGCGTTGCGCTACAGCGGCGAACCGGGCAGCGAACGTACCATCTACCTGCGCCTGTATCTGCATCCGG
ACACCCAGCTGCCAATCCTGGAGATCATTGACCGTGGGCCCGGCGTGCCCAGCGAGCATGTCGGCCATATCTTCGAGCCC
TTCTACACCACCGAGAACAGCGGCACAGGCCTTGGCCTGTATATTTCCCGCGAGCTGTGCGAGAGCAATCAGGCGCGCCT
GGAGTGCGACAGCGCACAACCACGGGGTTGCTGTATGCGCATCACCTTTGCTCACCCCAAACGGCTGGTATGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-372)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

49.905

99.434

0.496