Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   HV822_RS04445 Genome accession   NZ_CP079801
Coordinates   959431..960801 (-) Length   456 a.a.
NCBI ID   WP_238872563.1    Uniprot ID   -
Organism   Halopseudomonas maritima strain RR6     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 954431..965801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV822_RS04430 (HV822_04430) ettA 955660..957324 (+) 1665 WP_238872560.1 energy-dependent translational throttle protein EttA -
  HV822_RS04435 (HV822_04435) gdhA 957487..958824 (+) 1338 WP_238872561.1 NADP-specific glutamate dehydrogenase -
  HV822_RS04440 (HV822_04440) - 958873..959229 (+) 357 WP_238872562.1 PilZ domain-containing protein -
  HV822_RS04445 (HV822_04445) radA 959431..960801 (-) 1371 WP_238872563.1 DNA repair protein RadA Machinery gene
  HV822_RS04450 (HV822_04450) - 960964..961302 (+) 339 WP_238872564.1 hypothetical protein -
  HV822_RS04455 (HV822_04455) pap 961295..962749 (+) 1455 WP_238872565.1 polyphosphate:AMP phosphotransferase -
  HV822_RS04460 (HV822_04460) mscL 962843..963253 (+) 411 WP_275419407.1 large-conductance mechanosensitive channel protein MscL -
  HV822_RS04465 (HV822_04465) - 963330..964454 (+) 1125 WP_238872566.1 class I SAM-dependent methyltransferase -
  HV822_RS18205 (HV822_04470) - 964396..964584 (-) 189 WP_396265018.1 DUF2256 domain-containing protein -
  HV822_RS04470 (HV822_04475) - 964703..965017 (-) 315 WP_238872567.1 DUF6482 family protein -
  HV822_RS04475 (HV822_04480) - 965101..965595 (-) 495 WP_238872568.1 TIGR00645 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 48982.40 Da        Isoelectric Point: 7.6838

>NTDB_id=589551 HV822_RS04445 WP_238872563.1 959431..960801(-) (radA) [Halopseudomonas maritima strain RR6]
MAKQKRVYGCTECGATFSKWAGQCPECQAWNSMVETVVDTTPTGGSTSRSSNWTGQQAQIKTLAEVTTEETPRQPSGSSE
LDRVLGGGLVGGSVVLIGGDPGIGKSTILLQTLCRLAQNMSALYVTGEESQQQVAMRARRLGLPEDKLKVMTETCIESIV
ATARHEQPKVMVVDSIQTIFTEQLQSAPGGVAQVRESAALLVRYAKQSGTAIFLVGHVTKEGSLAGPRVLEHMVDTVLYF
EGEADGRYRMLRAVKNRFGAVNELGVFAMTDKGLKEVANPSAIFLSRYDAPIPGSVVMATWEGSRPMLVEVQALVDTSHL
GNPRRVTLGLDQNRLAMLLAVLHRHGGVATYDQDVFVNVVGGVKVLETAVDLALLAAVMSSLRNRPLPMDLMVFGELGLS
GEIRPVPSGQERLKEAAKHGFTRAIVPKANAPKESPKGMQVIAVTRLDQALAAIFE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=589551 HV822_RS04445 WP_238872563.1 959431..960801(-) (radA) [Halopseudomonas maritima strain RR6]
ATGGCCAAGCAAAAACGCGTATACGGTTGCACCGAGTGCGGTGCAACTTTTTCCAAATGGGCGGGGCAGTGTCCCGAATG
TCAGGCCTGGAATAGCATGGTCGAGACCGTGGTGGACACCACGCCGACCGGTGGCAGCACTTCTCGCTCAAGCAATTGGA
CCGGCCAGCAGGCGCAGATCAAGACGCTGGCCGAGGTCACTACCGAAGAAACGCCGCGCCAGCCCAGCGGCTCCTCGGAG
CTGGACCGGGTGCTGGGCGGTGGTTTGGTCGGTGGCTCGGTGGTCCTGATTGGTGGTGATCCGGGGATCGGCAAATCCAC
CATTTTGCTGCAGACCCTCTGTCGCCTGGCGCAGAACATGTCTGCGCTATACGTGACCGGTGAGGAGTCGCAGCAGCAGG
TGGCGATGCGCGCGCGTCGGCTCGGCTTGCCAGAGGACAAGCTCAAGGTCATGACCGAGACCTGCATCGAAAGCATTGTT
GCCACCGCCCGGCACGAGCAGCCGAAGGTGATGGTAGTGGACTCGATCCAGACCATTTTTACCGAGCAGTTGCAATCGGC
CCCGGGCGGCGTGGCGCAGGTGCGCGAGAGTGCCGCGCTACTGGTGCGCTACGCCAAGCAAAGCGGCACCGCGATCTTCC
TGGTGGGTCATGTCACCAAGGAGGGCTCGCTGGCTGGGCCGCGGGTGCTGGAGCACATGGTCGACACCGTGCTGTATTTC
GAGGGTGAGGCTGATGGTCGCTACCGCATGCTGCGGGCGGTGAAAAACCGTTTTGGCGCAGTCAACGAGCTGGGCGTGTT
TGCCATGACCGACAAGGGGCTGAAAGAGGTCGCCAACCCCTCGGCTATCTTCCTTTCTCGCTACGACGCGCCCATTCCGG
GCAGCGTGGTAATGGCGACCTGGGAGGGCTCGCGGCCCATGCTGGTTGAAGTGCAGGCGCTGGTCGACACCAGTCACCTG
GGCAACCCGCGGCGGGTGACCCTGGGGCTGGATCAGAACCGGCTCGCCATGCTGCTGGCGGTGCTGCATCGCCACGGTGG
CGTGGCGACCTACGACCAGGATGTCTTCGTCAATGTGGTGGGCGGGGTCAAGGTGCTCGAAACAGCCGTCGACCTGGCGT
TGCTGGCGGCGGTGATGTCGAGTTTGCGCAACCGTCCGTTGCCGATGGACCTGATGGTATTTGGTGAGCTGGGGCTGTCC
GGCGAAATTCGTCCGGTACCCAGCGGCCAGGAACGCCTCAAGGAAGCCGCCAAACACGGCTTCACCCGCGCGATTGTGCC
CAAGGCCAACGCACCAAAAGAGTCGCCCAAGGGCATGCAGGTGATTGCGGTAACGCGGCTGGATCAGGCGTTGGCGGCGA
TATTCGAGTAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(347-430)

AAA domain (AAA_25)

(79-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.119

99.561

0.489
  radA Streptococcus pneumoniae Rx1

47.368

100

0.474
  radA Streptococcus pneumoniae D39

47.368

100

0.474
  radA Streptococcus pneumoniae R6

47.368

100

0.474
  radA Streptococcus pneumoniae TIGR4

47.368

100

0.474
  radA Streptococcus mitis NCTC 12261

47.149

100

0.471
  radA Streptococcus mitis SK321

47.149

100

0.471