Detailed information NTG0589550

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: HV822_RS04390
• Genome accession: NZ_CP079801
• Coordinates: 942521..943864 (+)
• Length: 447 a.a.
• NCBI ID: WP_238872552.1
• Uniprot ID: -
• Organism: Halopseudomonas maritima strain RR6
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 937521..948864

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HV822_RS04370 (HV822_04370)	-	937656..938645 (+)	990	WP_238872548.1	outer membrane protein assembly factor BamD	-
HV822_RS04375 (HV822_04375)	-	938907..940538 (-)	1632	WP_238872549.1	NAD+ synthase	-
HV822_RS04380 (HV822_04380)	-	940668..940910 (+)	243	WP_238872550.1	PP0621 family protein	-
HV822_RS04385 (HV822_04385)	pilS	940891..942483 (+)	1593	WP_238872551.1	nitrogen regulation protein NR(II)	Regulator
HV822_RS04390 (HV822_04390)	pilR	942521..943864 (+)	1344	WP_238872552.1	sigma-54 dependent transcriptional regulator	Regulator
HV822_RS04395 (HV822_04395)	thiO	943877..944971 (-)	1095	WP_238872553.1	glycine oxidase ThiO	-
HV822_RS04400 (HV822_04400)	mqo	945415..946896 (+)	1482	WP_238872554.1	malate dehydrogenase (quinone)	-
HV822_RS04405 (HV822_04405)	-	946942..947997 (-)	1056	WP_238872555.1	M48 family metallopeptidase	-

Sequence

Protein

• Length: 447 a.a.
• Molecular weight: 49549.64 Da
• Isoelectric Point: 5.1435

>NTDB_id=589550 HV822_RS04390 WP_238872552.1 942521..943864(+) (pilR) [Halopseudomonas maritima strain RR6]
MTQPTVLIIDDEPDILELLELTLGRMDLDTRSASSLSQAIGLLQAESFALCLTDMRLPDGDGMAVVRHIQQHCPATPVAM
ITAYGSLDTAINALKAGAFDFLTKPVDLGRLRELVAAALKLNQPASPSQPSDEDPILGISPPIERLRRQIGKLARSQAPL
YISGESGSGKELVARRIHALSPRAEQPFVPVNCGAIPSELMESEFFGHRKGSFTGAVADKPGLFQAANHGTLFLDEVADL
PMAMQVKLLRAIQEKAVRPLGSQREEAIDVRLLCATHKDLAAEVAQGRFRQDLFYRINVIELQVPPLRERREDLPLLIQR
ILTRLAERNDMPAPQVTSSGMERLQSYRFPGNVRELENALERAFTLCENQQIDASDLYLSPCTSGQGDDSQDLSQIDHLE
DYLDNIERQAITQALEETRWNKTAAAKRLGLTFRSLRYRLKKLGLDE

Nucleotide

• Length: 1344 bp

>NTDB_id=589550 HV822_RS04390 WP_238872552.1 942521..943864(+) (pilR) [Halopseudomonas maritima strain RR6]
ATGACCCAACCCACGGTGCTGATCATTGACGATGAACCGGACATCCTCGAGCTGCTTGAGCTGACGTTGGGGCGCATGGA
CCTGGATACCCGCAGCGCCAGCAGCCTGTCACAGGCAATCGGTCTGCTGCAGGCCGAATCCTTCGCCCTCTGTCTGACCG
ATATGCGCCTGCCCGACGGCGACGGCATGGCGGTGGTTCGCCACATTCAGCAACACTGCCCCGCCACCCCGGTAGCGATG
ATCACCGCCTACGGCAGCCTGGACACCGCAATCAACGCCCTCAAGGCCGGCGCCTTCGACTTTCTCACCAAGCCGGTAGA
CCTTGGCCGCCTGCGCGAACTGGTGGCCGCCGCACTGAAACTCAATCAGCCCGCCAGCCCTAGCCAACCCTCGGACGAAG
ACCCGATTCTCGGCATCTCGCCGCCCATCGAGCGGCTGCGCCGGCAAATCGGCAAATTGGCGCGCAGCCAGGCACCGCTC
TACATCAGCGGCGAATCCGGCAGCGGCAAGGAGCTGGTCGCCCGCCGTATTCATGCCCTCAGTCCGCGGGCCGAGCAACC
CTTCGTGCCGGTCAACTGCGGCGCCATCCCCTCTGAGCTGATGGAGAGTGAGTTCTTCGGTCACCGCAAGGGCAGCTTTA
CCGGTGCGGTCGCCGACAAACCCGGCCTGTTTCAGGCGGCCAATCACGGCACCCTGTTTCTGGATGAGGTAGCCGACCTA
CCCATGGCCATGCAGGTAAAACTGCTGCGCGCCATTCAGGAAAAGGCTGTTCGGCCGCTTGGCAGCCAGCGCGAAGAAGC
TATCGACGTGCGCCTGCTGTGCGCCACCCACAAGGATCTGGCCGCCGAGGTAGCGCAAGGGCGTTTTCGCCAGGACTTGT
TTTACCGCATCAACGTCATCGAACTGCAGGTGCCGCCGCTACGCGAACGTCGGGAGGATTTGCCGCTGTTGATTCAGCGC
ATTCTGACGCGGCTGGCCGAGCGCAACGACATGCCGGCGCCACAGGTGACCAGCAGCGGCATGGAGCGACTGCAAAGCTA
TCGCTTTCCCGGCAACGTGCGCGAGCTGGAAAATGCCCTGGAGCGCGCCTTCACCCTGTGCGAAAACCAGCAGATCGACG
CCAGCGACCTGTACCTGAGTCCCTGCACCAGCGGCCAGGGCGATGACAGCCAGGACCTCAGCCAGATTGACCACCTGGAG
GACTACCTGGACAACATTGAACGTCAGGCCATAACCCAGGCGCTGGAAGAGACCCGTTGGAACAAGACCGCCGCAGCGAA
ACGGCTCGGTCTGACCTTCCGCTCGCTGCGTTACCGCCTGAAAAAACTCGGACTGGACGAGTAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (403-443)

• Sigma-54 interaction domain (Sigma54_activat) (137-303)

• Response regulator receiver domain (Response_reg) (6-115)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	71.973	99.776	0.718
pilR	Acinetobacter baumannii strain A118	48.701	100	0.503