Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KVH38_RS13710 Genome accession   NZ_CP078509
Coordinates   2906006..2908105 (-) Length   699 a.a.
NCBI ID   WP_041755270.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain S116     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2901006..2913105
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVH38_RS13700 (KVH38_13700) - 2902696..2904315 (-) 1620 WP_218650799.1 AAA family ATPase -
  KVH38_RS13705 (KVH38_13705) aroB 2904326..2905429 (-) 1104 WP_256449695.1 3-dehydroquinate synthase -
  KVH38_RS22490 aroK 2905454..2905999 (-) 546 WP_017244294.1 shikimate kinase AroK -
  KVH38_RS13710 (KVH38_13710) pilQ 2906006..2908105 (-) 2100 WP_041755270.1 type IV pilus secretin PilQ Machinery gene
  KVH38_RS13715 (KVH38_13715) pilP 2908159..2908686 (-) 528 WP_011911789.1 type 4a pilus biogenesis lipoprotein PilP -
  KVH38_RS13720 (KVH38_13720) pilO 2908683..2909309 (-) 627 WP_017244292.1 type 4a pilus biogenesis protein PilO -
  KVH38_RS13725 (KVH38_13725) pilN 2909306..2909878 (-) 573 WP_218650800.1 type 4a pilus biogenesis protein PilN -
  KVH38_RS13730 (KVH38_13730) comM 2909878..2910942 (-) 1065 WP_045159370.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 75134.07 Da        Isoelectric Point: 4.7313

>NTDB_id=587551 KVH38_RS13710 WP_041755270.1 2906006..2908105(-) (pilQ) [Stutzerimonas stutzeri strain S116]
MNTTLSRLGVSLLAVFISPALLAANLNALDVAALPGDRVELKLAFDEPVASPRGYTLDQPARIALDLPGVSNNLGAKNRE
LGVGNARSVTVVEAQGRTRLIVNLTALVPYSTRVDGNNLFVVLGEGSGTTSPAAASAAVTAPIAKPAPVKPMAAGKAIDN
IDFRRGEDGAGNVVITLSDPSVGSTIEEQGGKIRVVFAKAELPEALRVRLDVQDFATPVKFVDSTAQAGGASIAIEPTGR
YDYLAYQTDNKLTISVKPLTEEEADKRKTDRFAYSGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVSGNITLRLQNV
PWDQALDLVLKTKGLDKRQVGNVLLVAPADEIAARERQELESQRQIAELAPLRREVVQVNYAKAADIARLFQSVTNNGGV
AEERGSIAVDDRTNNIIAYQTQERLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGNLGAGNKWSAWGKNG
NLDIEDGEDGGQQITWPMNTPFVDMGAVGSTSGIGLGFVTDNAILDLQLSAMEKTGNGEVVSQPKVVTADKETAKILKGS
EVPYQEASSSGATSTSFKEAALSLEVTPQITPDNRIIMEVKVTKDEPDFSQAATTGVPAIRKNEVNAKVLVTDGETIVIG
GVFSNTQSKSVDKVPFLGDLPYLGRLFRRDLVQDRKSELLVFITPRIMNNQSIQASRSY

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=587551 KVH38_RS13710 WP_041755270.1 2906006..2908105(-) (pilQ) [Stutzerimonas stutzeri strain S116]
ATGAACACTACCCTTTCCCGTCTGGGCGTATCCCTGCTGGCGGTATTTATTTCGCCAGCACTGCTGGCGGCCAATCTCAA
CGCTTTGGATGTGGCTGCTTTGCCGGGCGATCGGGTTGAGTTGAAACTGGCATTTGACGAGCCTGTCGCGTCACCTCGTG
GCTACACGCTGGATCAGCCCGCGCGCATTGCCCTGGATCTTCCAGGTGTATCCAACAACCTGGGGGCTAAAAACCGAGAG
CTAGGCGTTGGTAATGCGCGCAGCGTAACGGTCGTCGAGGCTCAAGGGCGCACCCGGCTCATCGTCAATCTGACCGCGCT
TGTTCCGTATTCCACTCGAGTGGATGGGAACAATCTGTTTGTCGTGCTGGGAGAGGGCTCGGGGACGACCAGCCCTGCGG
CTGCATCCGCCGCGGTCACTGCTCCGATTGCCAAGCCTGCTCCGGTAAAGCCGATGGCGGCCGGCAAGGCGATCGACAAT
ATCGATTTTCGCCGCGGTGAAGATGGTGCCGGAAACGTGGTAATCACACTGTCCGATCCGTCGGTAGGTTCGACTATCGA
AGAGCAGGGAGGAAAGATCCGCGTTGTGTTCGCCAAGGCGGAGCTGCCTGAAGCGCTGCGTGTTCGGCTTGACGTCCAGG
ATTTCGCTACGCCGGTGAAGTTTGTCGACTCGACCGCTCAGGCAGGCGGTGCCAGTATCGCCATCGAGCCTACTGGGCGA
TACGATTATCTCGCCTACCAGACAGACAACAAGCTGACCATCAGCGTAAAGCCCCTTACAGAAGAAGAGGCCGATAAGCG
CAAGACAGACCGTTTTGCCTATTCCGGTGAAAAGCTGTCGCTGAACTTCCAAGATATTGATGTTCGTTCCGTACTCCAGT
TGATCGCTGATTTTACTGACCTGAACTTGGTTGCCAGCGATACCGTCAGTGGCAACATCACCCTTCGTTTGCAGAACGTG
CCTTGGGACCAAGCACTCGACCTCGTTTTGAAAACCAAAGGGCTGGATAAGCGGCAAGTCGGTAACGTACTGCTCGTTGC
GCCCGCTGATGAAATCGCGGCACGTGAACGCCAAGAGCTTGAGTCGCAGCGCCAAATTGCCGAGCTTGCACCGTTGCGTC
GCGAGGTTGTGCAGGTCAACTATGCCAAGGCTGCGGACATTGCCCGCCTGTTTCAGTCGGTGACGAACAATGGCGGCGTG
GCGGAAGAGCGTGGATCGATTGCGGTGGACGACCGTACTAACAACATCATCGCTTATCAAACGCAAGAGCGGCTAGATGA
GTTGCGTCGTATTGTTGCTCAGCTCGATATCCCGGTGCGGCAGGTCATGATCGAAGCGCGGATCGTCGAGGCGAACGTTG
ACTACGACAAGAGTCTCGGCGTTCGCTGGGGGGGAAATCTTGGAGCTGGCAACAAATGGAGCGCTTGGGGAAAGAACGGC
AATCTGGATATTGAGGATGGTGAAGACGGCGGCCAACAGATTACATGGCCTATGAATACGCCGTTTGTAGATATGGGGGC
TGTCGGTTCTACTTCTGGCATTGGACTCGGATTTGTAACGGATAACGCGATCCTTGACCTCCAGCTTTCGGCGATGGAGA
AGACGGGAAATGGCGAGGTGGTTTCTCAGCCTAAAGTGGTTACTGCCGATAAGGAAACTGCAAAAATTCTCAAAGGCTCG
GAAGTTCCCTATCAGGAAGCTAGTTCCAGTGGGGCAACTAGCACATCCTTTAAAGAGGCTGCGCTTTCGCTAGAGGTGAC
GCCGCAGATTACGCCGGATAACCGAATCATCATGGAAGTAAAGGTCACAAAGGATGAGCCGGATTTTTCACAGGCAGCGA
CAACCGGCGTGCCGGCTATCCGCAAGAATGAAGTGAACGCGAAAGTGCTTGTCACTGATGGCGAGACGATTGTTATCGGC
GGAGTCTTCTCTAATACGCAAAGCAAATCGGTCGATAAGGTGCCATTCCTTGGGGATTTGCCATATCTTGGACGCCTTTT
CCGTCGCGACCTAGTGCAAGATCGAAAATCTGAGCTGCTTGTGTTCATTACTCCTAGGATCATGAATAATCAGTCAATCC
AAGCTAGCCGCTCATATTGA

Domains

Predicted by InterproScan.

AMIN domain (AMIN)

(38-123)

Secretin and TonB N terminus short domain (STN)

(302-348)

Bacterial type II/III secretion system short domain (Secretin_N)

(375-441)

Bacterial type II and III secretion system protein (Secretin)

(531-688)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

75.173

100

0.775
  pilQ Acinetobacter baumannii D1279779

39.892

100

0.423
  pilQ Acinetobacter baumannii strain A118

39.892

100

0.423
  comQ Acinetobacter baylyi ADP1

41.908

98.999

0.415
  pilQ Legionella pneumophila strain Lp02

37.518

96.853

0.363
  pilQ Legionella pneumophila strain ERS1305867

37.518

96.853

0.363