Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYB   Type   Machinery gene
Locus tag   TL13_RS00785 Genome accession   NC_021213
Coordinates   127370..128407 (+) Length   345 a.a.
NCBI ID   WP_051089044.1    Uniprot ID   -
Organism   Streptococcus suis TL13     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 122370..133407
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  TL13_RS00770 (TL13_0153) - 125072..125437 (+) 366 WP_014637310.1 DUF1033 family protein -
  TL13_RS00775 (TL13_0154) - 125472..126422 (-) 951 WP_014637311.1 S66 peptidase family protein -
  TL13_RS00780 (TL13_0155) comYA 126508..127458 (+) 951 WP_015646270.1 competence type IV pilus ATPase ComGA Machinery gene
  TL13_RS00785 (TL13_0156) comYB 127370..128407 (+) 1038 WP_051089044.1 competence type IV pilus assembly protein ComGB Machinery gene
  TL13_RS00790 (TL13_0157) comYC 128409..128690 (+) 282 WP_015646272.1 competence type IV pilus major pilin ComGC Machinery gene
  TL13_RS00795 (TL13_0158) comGD 128671..129078 (+) 408 WP_015646273.1 competence type IV pilus minor pilin ComGD -
  TL13_RS00800 (TL13_0159) comYE 129050..129343 (+) 294 WP_024401507.1 competence type IV pilus minor pilin ComGE Machinery gene
  TL13_RS00805 (TL13_0160) comGF/cglF 129330..129764 (+) 435 WP_015646275.1 competence type IV pilus minor pilin ComGF Machinery gene
  TL13_RS00810 (TL13_0161) comGG 129742..130155 (+) 414 WP_015646276.1 competence type IV pilus minor pilin ComGG -
  TL13_RS00815 (TL13_0162) - 131334..132008 (-) 675 WP_015646277.1 head maturation protease, ClpP-related -
  TL13_RS00820 (TL13_0163) - 131998..132489 (-) 492 WP_015646278.1 hypothetical protein -
  TL13_RS00825 (TL13_0164) - 132502..133017 (-) 516 WP_041179361.1 hypothetical protein -
  TL13_RS10750 (TL13_0165) - 133165..133332 (-) 168 WP_015646280.1 hypothetical protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39001.03 Da        Isoelectric Point: 9.1394

>NTDB_id=58608 TL13_RS00785 WP_051089044.1 127370..128407(+) (comYB) [Streptococcus suis TL13]
MRKLIAFLQQDISVFGRQKQKKLPLVRQRKVIELFNNLFASGFHLGEIVDFLKRSQLLADPYTQVLSDGLLAGKPFSSLL
ADLRFSDAVVTQVALAEVHGNTSLSLSHIQSYLENVSKVRKKLIEVTTYPIILLGFLLLIMLGLKNYLLPQLEEGNAATM
LINHLPTIFLSLCGLSLVAVLAGLVWFRKTNKIKVFSCLAALPFFGKLIQTYLTAYYAREWGSLIGQGLDLPQIVGLMQE
QQSQLFREIGQDLEQSLSNGQSFHEHIKTYAFFKRELSLIVEYGQVKSKLGGELTVYAAECWEDFFSRVNRAMQLIQPLV
FLFVALMVVLIYAAMLLPIYQNMEL

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=58608 TL13_RS00785 WP_051089044.1 127370..128407(+) (comYB) [Streptococcus suis TL13]
ATGCGCAAATTGATCGCCTTTTTGCAGCAGGACATATCAGTCTTCGGCAGGCAGAAACAGAAAAAATTGCCCTTGGTTCG
CCAGCGTAAGGTCATTGAGCTTTTCAATAATCTTTTTGCTAGTGGTTTTCATTTGGGGGAGATTGTTGATTTCCTCAAAC
GCAGTCAGCTTCTGGCAGATCCCTATACCCAGGTCTTGTCAGACGGGCTGTTAGCAGGCAAACCCTTTTCAAGTTTGCTG
GCGGATTTGCGGTTTTCAGATGCGGTGGTCACACAGGTGGCTCTGGCAGAAGTTCATGGCAATACCAGCCTCAGTTTGAG
CCATATCCAGTCCTATCTGGAAAATGTCAGCAAGGTTCGTAAAAAGCTGATTGAGGTGACGACCTATCCGATTATTTTAC
TAGGTTTTCTGCTCTTGATTATGCTGGGTTTGAAAAATTATCTTCTGCCCCAGTTGGAGGAAGGCAATGCAGCGACTATG
CTAATTAATCATCTGCCGACCATCTTTTTATCCCTCTGTGGACTTAGTTTAGTGGCGGTCTTAGCTGGTCTTGTTTGGTT
TCGCAAAACTAACAAAATCAAGGTCTTTTCCTGCTTAGCAGCTCTGCCATTTTTCGGAAAACTCATCCAAACCTATCTGA
CGGCCTATTACGCCAGGGAGTGGGGGAGTTTGATTGGGCAAGGCTTGGACCTGCCGCAGATTGTGGGTTTGATGCAGGAG
CAGCAATCGCAGCTCTTTCGAGAGATTGGACAGGACCTGGAGCAGTCGCTTTCCAATGGTCAGAGTTTTCACGAACACAT
TAAGACCTATGCCTTTTTTAAGCGGGAGCTGAGTTTGATTGTCGAGTATGGTCAGGTCAAGTCCAAGTTGGGTGGCGAGT
TGACAGTCTATGCAGCCGAGTGCTGGGAGGATTTTTTCTCTCGGGTTAATAGAGCCATGCAGCTGATTCAACCGCTGGTC
TTTCTCTTTGTGGCCTTAATGGTCGTTCTTATCTACGCAGCCATGTTGCTGCCGATTTATCAAAATATGGAGTTATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(33-150)

Type II secretion system (T2SS), protein F (T2SSF)

(218-338)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYB Streptococcus gordonii str. Challis substr. CH1

63.158

99.13

0.626
  comYB Streptococcus mutans UA140

59.184

99.42

0.588
  comYB Streptococcus mutans UA159

59.184

99.42

0.588
  comGB/cglB Streptococcus mitis NCTC 12261

60.299

97.101

0.586
  comGB/cglB Streptococcus mitis SK321

60

97.101

0.583
  comGB/cglB Streptococcus pneumoniae Rx1

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae D39

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae R6

59.701

97.101

0.58
  comGB/cglB Streptococcus pneumoniae TIGR4

59.701

97.101

0.58
  comGB Lactococcus lactis subsp. cremoris KW2

50.148

97.681

0.49

Multiple sequence alignment