Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   ECTOK1_RS02325 Genome accession   NZ_AP018395
Coordinates   487811..488416 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain TOK-001     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 482811..493416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECTOK1_RS02290 - 483365..483463 (+) 99 Protein_448 hypothetical protein -
  ECTOK1_RS02295 (ECTOK1_C04350) rsmS 483516..483677 (-) 162 WP_000051146.1 pleiotropic regulatory protein RsmS -
  ECTOK1_RS02300 (ECTOK1_C04360) priC 483691..484218 (-) 528 WP_000844876.1 primosomal replication protein N'' -
  ECTOK1_RS02305 (ECTOK1_C04370) ybaN 484288..484665 (+) 378 WP_001188905.1 DUF454 family protein -
  ECTOK1_RS02310 (ECTOK1_C04380) apt 484818..485369 (+) 552 WP_338816761.1 adenine phosphoribosyltransferase -
  ECTOK1_RS02315 (ECTOK1_C04390) dnaX 485498..487429 (+) 1932 WP_000122015.1 DNA polymerase III subunit gamma/tau -
  ECTOK1_RS02320 (ECTOK1_C04400) ybaB 487482..487811 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  ECTOK1_RS02325 (ECTOK1_C04410) recR 487811..488416 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  ECTOK1_RS02330 (ECTOK1_C04420) htpG 488526..490400 (+) 1875 WP_000678201.1 molecular chaperone HtpG -
  ECTOK1_RS02335 (ECTOK1_C04430) adk 490581..491225 (+) 645 WP_001220233.1 adenylate kinase -
  ECTOK1_RS02340 (ECTOK1_C04440) hemH 491357..492319 (+) 963 WP_338816762.1 ferrochelatase -
  ECTOK1_RS02345 (ECTOK1_C04450) aes 492294..493262 (-) 969 WP_000801858.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=58611 ECTOK1_RS02325 WP_001195025.1 487811..488416(+) (recR) [Escherichia coli strain TOK-001]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=58611 ECTOK1_RS02325 WP_001195025.1 487811..488416(+) (recR) [Escherichia coli strain TOK-001]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGTGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGCCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAATCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment