Detailed information NTG0585640

Bioinformatically predicted

Overview

• Name: comYB
• Type: Machinery gene
• Locus tag: KVP03_RS02160
• Genome accession: NZ_CP077959
• Coordinates: 430694..431728 (+)
• Length: 344 a.a.
• NCBI ID: WP_227687788.1
• Uniprot ID: -
• Organism: Streptococcus equi subsp. zooepidemicus strain SEZ_14-145
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 425694..436728

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KVP03_RS02140 (KVP03_02135)	-	426734..426925 (+)	192	Protein_361	lactococcin 972 family bacteriocin	-
KVP03_RS02145 (KVP03_02140)	-	426990..428993 (+)	2004	WP_111692093.1	DUF1430 domain-containing protein	-
KVP03_RS02150 (KVP03_02145)	-	428995..429642 (+)	648	WP_111692094.1	ABC transporter ATP-binding protein	-
KVP03_RS02155 (KVP03_02150)	comGA/cglA	429823..430761 (+)	939	WP_230923172.1	competence type IV pilus ATPase ComGA	Machinery gene
KVP03_RS02160 (KVP03_02155)	comYB	430694..431728 (+)	1035	WP_227687788.1	competence type IV pilus assembly protein ComGB	Machinery gene
KVP03_RS02165 (KVP03_02160)	comGC/cglC	431729..432052 (+)	324	WP_012514782.1	competence type IV pilus major pilin ComGC	Machinery gene
KVP03_RS02170 (KVP03_02165)	comGD	432030..432455 (+)	426	WP_012514783.1	competence type IV pilus minor pilin ComGD	-
KVP03_RS02175 (KVP03_02170)	comGE	432460..432702 (+)	243	WP_012677236.1	competence type IV pilus minor pilin ComGE	-
KVP03_RS02180 (KVP03_02175)	comYF	432689..433123 (+)	435	WP_037580631.1	competence type IV pilus minor pilin ComGF	Machinery gene
KVP03_RS02185 (KVP03_02180)	comGG	433101..433463 (+)	363	WP_012514785.1	competence type IV pilus minor pilin ComGG	-
KVP03_RS02190 (KVP03_02185)	-	433531..434873 (+)	1343	WP_195759329.1	IS3 family transposase	-
KVP03_RS02195 (KVP03_02190)	comYH	434957..435910 (+)	954	WP_154298646.1	class I SAM-dependent methyltransferase	Machinery gene

Sequence

Protein

• Length: 344 a.a.
• Molecular weight: 39440.70 Da
• Isoelectric Point: 9.4360

>NTDB_id=585640 KVP03_RS02160 WP_227687788.1 430694..431728(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MISFLRRDISIPGRQGLKKLSSKQQEKLIQLLYNLLSNGFNLTEVIAFLRKSQLLLPVYVTSMEASLLKGNGLADMLAAL
GYSDAVMTQINLADKHGNIKLTLEKIQDYLSQFRQIKRKTIEAVTYPIILLGFLVVIMLGLRHYLIPQLESQNTLTDLLL
HLPHYFLGFCLLVLLLIGSFYLYAKSCSRLKLFSQLSYYPIIGSLLRQYLTAYYAREWGNLIGQGLELITILEMMSNEKS
QLMRELAKDIKQSLLAGQSFHQRVAAYPFFKKELSLMIEYGDIKSKLGQELDIYSQESWETFFSQLNRATQWIQPIIFLV
VAVVIVMIYAAILLPIYQHMGDVF

Nucleotide

• Length: 1035 bp

>NTDB_id=585640 KVP03_RS02160 WP_227687788.1 430694..431728(+) (comYB) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
TTGATCAGCTTCTTGCGGAGGGACATCTCAATACCGGGCAGGCAAGGCTTGAAAAAATTATCCAGTAAGCAGCAGGAAAA
GCTTATCCAATTGCTCTATAACCTATTGTCTAACGGCTTTAATTTGACAGAGGTCATTGCTTTTTTGAGAAAAAGCCAGC
TGCTACTGCCAGTCTATGTTACAAGTATGGAAGCAAGCCTATTAAAGGGCAACGGCCTTGCTGACATGCTAGCAGCCTTA
GGTTACTCTGATGCTGTTATGACACAAATTAATCTGGCAGATAAGCATGGCAATATCAAGCTAACCTTGGAAAAAATTCA
GGACTATCTGAGTCAATTTCGCCAAATCAAGCGAAAGACCATCGAGGCAGTCACTTATCCGATTATACTTTTGGGTTTTT
TAGTGGTTATCATGCTAGGCTTGCGGCATTACCTAATCCCTCAGCTAGAGAGTCAAAATACCTTGACTGACTTGTTGCTT
CATTTGCCTCATTATTTCTTAGGTTTTTGTTTGCTTGTGCTGTTGCTAATTGGCTCTTTTTACCTATATGCCAAGTCCTG
TAGTCGGCTAAAACTATTTAGTCAGCTGAGCTATTATCCTATCATTGGGTCCTTATTGCGGCAATATTTGACAGCCTACT
ATGCTAGGGAATGGGGGAACCTCATCGGACAAGGCTTAGAATTAATCACCATTTTGGAGATGATGTCAAACGAAAAGTCA
CAGCTCATGCGAGAGCTTGCCAAGGATATCAAGCAGAGTCTACTAGCTGGCCAATCCTTTCATCAAAGGGTTGCAGCTTA
TCCCTTTTTTAAAAAGGAGCTAAGCCTAATGATTGAATATGGTGACATCAAATCAAAGCTTGGTCAGGAATTAGATATCT
ATTCCCAAGAAAGCTGGGAGACCTTTTTTAGTCAGCTTAATCGGGCAACACAATGGATCCAGCCGATTATTTTTTTAGTG
GTTGCTGTGGTTATTGTGATGATTTATGCTGCTATTTTATTACCAATTTATCAACATATGGGAGATGTTTTTTAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein F (T2SSF) (215-335)

• Type II secretion system (T2SS), protein F (T2SSF) (29-147)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYB	Streptococcus mutans UA140	53.982	98.547	0.532
comYB	Streptococcus mutans UA159	53.982	98.547	0.532
comYB	Streptococcus gordonii str. Challis substr. CH1	52.059	98.837	0.515
comGB/cglB	Streptococcus mitis NCTC 12261	48.81	97.674	0.477
comGB/cglB	Streptococcus mitis SK321	49.249	96.802	0.477
comGB/cglB	Streptococcus pneumoniae Rx1	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae D39	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae R6	48.649	96.802	0.471
comGB/cglB	Streptococcus pneumoniae TIGR4	48.649	96.802	0.471
comGB	Lactococcus lactis subsp. cremoris KW2	46.933	94.767	0.445