Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   KVP03_RS02195 Genome accession   NZ_CP077959
Coordinates   434957..435910 (+) Length   317 a.a.
NCBI ID   WP_154298646.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain SEZ_14-145     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 433531..434873 434957..435910 flank 84


Gene organization within MGE regions


Location: 433531..435910
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KVP03_RS02190 (KVP03_02185) - 433531..434873 (+) 1343 WP_195759329.1 IS3 family transposase -
  KVP03_RS02195 (KVP03_02190) comYH 434957..435910 (+) 954 WP_154298646.1 class I SAM-dependent methyltransferase Machinery gene

Sequence

Protein


Download         Length: 317 a.a.        Molecular weight: 35725.74 Da        Isoelectric Point: 4.7642

>NTDB_id=585643 KVP03_RS02195 WP_154298646.1 434957..435910(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
MNFEKIEQAYELILENSQLIENNLKTHIYDAIVEQNSFYLGAQGASPQVAKNIETLKALQLTKEEWRQAYQFVLIKAGKT
EPLQANHQFTPDAIGFIMLYILETLSSQESLDVLEIGSGTGNLAQTILNHSHKSIDYLGIELDDLLIDLSASIAEIMGSS
AQFIQEDAVRPQLLKESDMIISDLPVGFYPNDDIASRYQVASSDEHTYAHHLLMEQALKYLKKDGFAIFLAPVNLLSSPQ
SHLLKQWLKGYAQVAALITLPEAVFGNPANAKSIIVLCKQSNRFAETFVYPIRDLKSVDNVRDFMENFKNWKRDNVI

Nucleotide


Download         Length: 954 bp        

>NTDB_id=585643 KVP03_RS02195 WP_154298646.1 434957..435910(+) (comYH) [Streptococcus equi subsp. zooepidemicus strain SEZ_14-145]
ATGAATTTTGAAAAGATTGAACAAGCCTATGAGCTTATATTAGAAAATAGCCAGCTGATTGAAAATAATTTAAAAACGCA
TATCTATGATGCTATTGTTGAGCAGAATTCTTTTTATCTGGGAGCCCAAGGAGCAAGCCCTCAGGTTGCTAAAAATATTG
AGACGTTGAAGGCCTTGCAGTTAACCAAGGAGGAGTGGCGCCAGGCTTATCAGTTTGTTTTGATCAAGGCTGGGAAAACA
GAGCCATTACAGGCCAACCACCAATTTACCCCAGACGCGATCGGCTTTATCATGCTTTATATTTTGGAGACCTTGAGTTC
ACAAGAGTCACTTGATGTGCTTGAGATTGGCAGTGGAACAGGTAATTTAGCTCAAACTATTTTAAACCACTCACATAAGA
GCATTGATTATTTAGGCATTGAGCTTGATGATTTATTAATTGATCTATCAGCTAGTATTGCTGAAATCATGGGGTCGTCA
GCCCAGTTTATTCAAGAGGATGCTGTCAGACCTCAGCTGTTAAAGGAAAGTGATATGATCATTAGTGATTTGCCAGTTGG
CTTTTATCCTAACGATGATATTGCCAGCAGGTATCAGGTGGCTAGCTCAGATGAGCATACCTATGCCCATCATTTACTGA
TGGAACAGGCCTTAAAGTACCTGAAAAAAGATGGTTTTGCTATTTTCTTAGCACCGGTAAATCTTTTGAGCAGCCCACAA
AGTCACCTCTTAAAACAATGGCTGAAGGGCTATGCTCAGGTTGCGGCCTTGATTACTTTGCCTGAGGCTGTGTTTGGCAA
TCCAGCTAATGCAAAATCGATTATTGTTCTTTGTAAGCAATCGAATCGCTTTGCAGAAACCTTTGTTTACCCCATTAGGG
ATTTGAAATCTGTTGATAATGTTCGTGATTTTATGGAAAACTTCAAAAATTGGAAACGGGATAATGTTATTTAA

Domains

Predicted by InterproScan.

N-6 DNA Methylase (N6_Mtase)

(68-294)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA159

63.608

99.685

0.634
  comYH Streptococcus mutans UA140

63.608

99.685

0.634