Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   MX621_RS09680 Genome accession   NZ_CP095923
Coordinates   2050009..2050338 (+) Length   109 a.a.
NCBI ID   WP_003091430.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain AR19438     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2045009..2055338
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MX621_RS09665 (MX621_09665) - 2045663..2046613 (+) 951 WP_020750837.1 NAD-dependent epimerase/dehydratase family protein -
  MX621_RS09670 (MX621_09670) - 2046656..2047675 (+) 1020 WP_003110852.1 glycosyltransferase family 4 protein -
  MX621_RS09675 (MX621_09675) - 2047821..2049818 (+) 1998 WP_003143571.1 nucleoside-diphosphate sugar epimerase/dehydratase -
  MX621_RS09680 (MX621_09680) comEA/comE1 2050009..2050338 (+) 330 WP_003091430.1 ComEA family DNA-binding protein Machinery gene
  MX621_RS09690 (MX621_09690) - 2050555..2051751 (-) 1197 WP_003110849.1 amino acid aminotransferase -
  MX621_RS09695 (MX621_09695) uvrB 2051939..2053951 (+) 2013 WP_003110848.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=585641 MX621_RS09680 WP_003091430.1 2050009..2050338(+) (comEA/comE1) [Pseudomonas aeruginosa strain AR19438]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLAATTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRSRIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=585641 MX621_RS09680 WP_003091430.1 2050009..2050338(+) (comEA/comE1) [Pseudomonas aeruginosa strain AR19438]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCGCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGTCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385