Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA   Type   Machinery gene
Locus tag   KU530_RS01635 Genome accession   NZ_CP077921
Coordinates   306524..307210 (+) Length   228 a.a.
NCBI ID   WP_001788928.1    Uniprot ID   -
Organism   Staphylococcus aureus strain 276     
Function   dsDNA binding to the cell surface (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 301524..312210
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KU530_RS01600 (KU530_01585) yqeH 302051..303151 (+) 1101 WP_001280136.1 ribosome biogenesis GTPase YqeH -
  KU530_RS01605 (KU530_01590) aroE 303165..303971 (+) 807 WP_000666744.1 shikimate dehydrogenase -
  KU530_RS01610 (KU530_01595) yhbY 303975..304265 (+) 291 WP_000955231.1 ribosome assembly RNA-binding protein YhbY -
  KU530_RS01615 (KU530_01600) nadD 304268..304837 (+) 570 WP_000725162.1 nicotinate (nicotinamide) nucleotide adenylyltransferase -
  KU530_RS01620 (KU530_01605) yqeK 304827..305411 (+) 585 WP_001019326.1 bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK -
  KU530_RS01625 (KU530_01610) rsfS 305412..305765 (+) 354 WP_001088020.1 ribosome silencing factor -
  KU530_RS01630 (KU530_01615) - 305768..306484 (+) 717 WP_000084829.1 class I SAM-dependent DNA methyltransferase -
  KU530_RS01635 (KU530_01620) comEA 306524..307210 (+) 687 WP_001788928.1 ComEA family DNA-binding protein Machinery gene
  KU530_RS01640 (KU530_01625) - 307302..307763 (+) 462 WP_000439693.1 ComE operon protein 2 -
  KU530_RS01645 (KU530_01630) comEC 307768..309969 (+) 2202 WP_225806597.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  KU530_RS01650 (KU530_01635) holA 310026..311000 (+) 975 WP_001282562.1 DNA polymerase III subunit delta -
  KU530_RS01655 (KU530_01640) rpsT 311045..311296 (-) 252 WP_001274017.1 30S ribosomal protein S20 -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25888.59 Da        Isoelectric Point: 9.6751

>NTDB_id=585152 KU530_RS01635 WP_001788928.1 306524..307210(+) (comEA) [Staphylococcus aureus strain 276]
MVLLYQFLLRYKDFLTQWKLYIISAVVLIMVLIGFIFWRQDDYTSRNFENKDTALKQSTSENNSLSKLEDVQVKDGDNSK
NKGPVYVDVKGAVKHPNVYKMTSKDRVVDLLDKAQLLDDADVSRINLSEKLTDQKMIFIPHKGQKNVEPQIEVNSVHVKN
GNTNNTKVNLNTASVSELMSVPGVGQAKANAIVEYRNQQGAFQEIDDLKKVKGFGSKTFDKLKSYFTT

Nucleotide


Download         Length: 687 bp        

>NTDB_id=585152 KU530_RS01635 WP_001788928.1 306524..307210(+) (comEA) [Staphylococcus aureus strain 276]
GTGGTTTTATTGTATCAATTTTTATTACGCTATAAAGATTTTTTAACTCAGTGGAAGTTATATATTATAAGTGCTGTTGT
TTTAATTATGGTATTAATTGGTTTTATATTCTGGAGACAAGATGATTATACTTCAAGAAATTTTGAAAATAAAGATACTG
CTCTGAAACAAAGCACTAGTGAAAATAATAGTTTGTCCAAATTAGAAGATGTCCAGGTCAAAGATGGAGATAATTCCAAA
AATAAAGGTCCTGTATATGTCGATGTAAAAGGTGCTGTTAAACATCCTAATGTTTATAAAATGACATCTAAGGATAGAGT
AGTTGATTTACTTGATAAAGCACAATTATTGGATGATGCAGATGTAAGTCGAATTAATTTGTCTGAAAAATTAACAGATC
AAAAAATGATTTTCATACCTCATAAAGGACAAAAGAATGTTGAACCACAAATTGAAGTAAACAGTGTGCACGTAAAAAAT
GGGAACACAAATAATACTAAAGTAAATTTAAATACGGCATCTGTATCAGAATTGATGTCTGTTCCTGGAGTAGGGCAAGC
TAAAGCTAATGCAATTGTTGAATATCGCAACCAACAAGGTGCATTTCAAGAAATTGACGATTTGAAAAAAGTAAAAGGTT
TTGGAAGTAAAACTTTTGATAAACTGAAATCTTATTTCACGACATAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix motif (HHH_3)

(164-227)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA Staphylococcus aureus N315

100

99.561

0.996
  comEA Staphylococcus aureus MW2

97.357

99.561

0.969