Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilC   Type   Machinery gene
Locus tag   KQ937_RS01965 Genome accession   NZ_CP077686
Coordinates   393907..395133 (-) Length   408 a.a.
NCBI ID   WP_284649320.1    Uniprot ID   -
Organism   Photobacterium damselae strain Pdd0906     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 388907..400133
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQ937_RS01940 (KQ937_01940) mutT 390731..391138 (-) 408 WP_069530749.1 8-oxo-dGTP diphosphatase MutT -
  KQ937_RS01945 (KQ937_01945) yacG 391219..391428 (-) 210 WP_005297592.1 DNA gyrase inhibitor YacG -
  KQ937_RS01950 (KQ937_01950) zapD 391437..392174 (-) 738 WP_005297594.1 cell division protein ZapD -
  KQ937_RS01955 (KQ937_01955) coaE 392242..392844 (-) 603 WP_106338475.1 dephospho-CoA kinase -
  KQ937_RS01960 (KQ937_01960) pilD 392846..393724 (-) 879 WP_284669261.1 A24 family peptidase Machinery gene
  KQ937_RS01965 (KQ937_01965) pilC 393907..395133 (-) 1227 WP_284649320.1 type II secretion system F family protein Machinery gene
  KQ937_RS01970 (KQ937_01970) pilB 395199..396890 (-) 1692 WP_176848885.1 type IV-A pilus assembly ATPase PilB Machinery gene
  KQ937_RS01975 (KQ937_01975) - 396900..397328 (-) 429 WP_284669262.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  KQ937_RS01980 (KQ937_01980) ampD 397713..398291 (+) 579 WP_284669263.1 1,6-anhydro-N-acetylmuramyl-L-alanine amidase AmpD -
  KQ937_RS01985 (KQ937_01985) pdhR 398651..399424 (+) 774 WP_284669264.1 pyruvate dehydrogenase complex transcriptional repressor PdhR -

Sequence

Protein


Download         Length: 408 a.a.        Molecular weight: 45048.21 Da        Isoelectric Point: 9.9664

>NTDB_id=582268 KQ937_RS01965 WP_284649320.1 393907..395133(-) (pilC) [Photobacterium damselae strain Pdd0906]
MAQLAANKIRYYRWRGVNQGGKKITGVTLGFQEQEVRSQLTEQMIQVKKIKRTNPSTLDKIRNQMKSSDVTAITRQLATM
IESGVPIVQALKLMACSHHKAEVRAVLTQVNTQVEAGASLSKALKSSSPLFDNFYCDLVATGEETGYLGQVFVRLATYRE
KSEAMRKKVIKAMIYPSMVMLTAISVTILMLVFVIPQFAAIFGSFGAELPWFTRQVLKASDFLINYGGYLAVGLLLALVL
YRYSYKRSYSFRLRMARLSLRLPIIGNVVLKATIARFARTLATTFSAGIPLLTGLQSAGKTAGNLHIEEAIMEAHTSAAA
GMPLYLSLRQCNVFPELMLQMTMIGEESGSLDDMLNKMASLYENDVDNIVDNLGQILEPLIIIVLGVLIGGLLVAMYMPI
FTLMSVIG

Nucleotide


Download         Length: 1227 bp        

>NTDB_id=582268 KQ937_RS01965 WP_284649320.1 393907..395133(-) (pilC) [Photobacterium damselae strain Pdd0906]
ATGGCACAGTTAGCCGCTAATAAAATCCGTTATTATCGCTGGCGAGGGGTAAACCAAGGCGGCAAGAAAATCACAGGCGT
AACCTTAGGTTTTCAAGAACAAGAAGTGCGATCGCAACTGACCGAGCAGATGATCCAAGTAAAAAAGATCAAGCGCACCA
ATCCATCTACGCTCGATAAAATCCGCAATCAGATGAAAAGTAGCGATGTAACGGCTATTACCCGCCAACTTGCGACCATG
ATCGAATCTGGAGTTCCGATTGTGCAAGCTCTGAAGCTAATGGCCTGTAGCCATCATAAAGCAGAAGTGCGCGCGGTATT
AACTCAGGTCAACACCCAAGTAGAAGCCGGAGCCTCACTGTCAAAAGCGCTAAAATCAAGTTCGCCGTTGTTTGATAATT
TCTACTGTGACTTAGTCGCAACCGGGGAAGAAACCGGGTATCTTGGTCAAGTATTTGTTCGCTTAGCTACGTATCGAGAA
AAAAGCGAAGCGATGCGAAAAAAAGTGATTAAGGCGATGATTTACCCATCCATGGTGATGCTAACGGCCATCAGTGTCAC
TATCTTAATGCTGGTCTTTGTTATCCCTCAATTTGCCGCTATTTTTGGCAGTTTTGGCGCTGAACTTCCTTGGTTTACTC
GCCAAGTATTAAAAGCCTCGGATTTCCTAATTAACTATGGGGGATACTTAGCTGTAGGTTTGCTGCTTGCACTCGTGCTT
TATCGTTATAGCTATAAACGGTCCTATTCGTTTCGGTTACGGATGGCTAGGTTAAGCTTACGCCTGCCCATTATCGGTAA
CGTCGTACTCAAAGCAACTATTGCCCGTTTTGCTCGAACCCTTGCGACCACTTTTAGTGCCGGTATTCCCCTACTAACAG
GTCTACAGTCGGCTGGTAAAACCGCAGGCAACTTACATATAGAAGAGGCCATTATGGAAGCACATACCAGTGCAGCGGCG
GGGATGCCACTCTATTTATCTTTGCGCCAATGCAATGTTTTTCCAGAGCTTATGTTGCAGATGACCATGATCGGGGAAGA
GTCCGGCTCTCTTGACGATATGCTCAATAAAATGGCAAGCCTATATGAAAACGATGTCGATAATATCGTTGATAACCTCG
GCCAAATTTTAGAGCCTTTGATCATCATTGTGCTTGGCGTTCTGATCGGCGGTTTACTCGTGGCAATGTATATGCCGATC
TTCACCCTAATGAGCGTTATTGGTTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(277-399)

Type II secretion system (T2SS), protein F (T2SSF)

(74-196)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilC Vibrio campbellii strain DS40M4

55.087

98.775

0.544
  pilC Vibrio cholerae strain A1552

55.5

98.039

0.544
  pilG Neisseria meningitidis 44/76-A

42.222

99.265

0.419
  pilG Neisseria gonorrhoeae MS11

42.222

99.265

0.419
  pilC Acinetobacter baumannii D1279779

40.196

100

0.402
  pilC Pseudomonas stutzeri DSM 10701

40.049

99.755

0.4
  pilC Acinetobacter baylyi ADP1

39.798

97.304

0.387
  pilC Legionella pneumophila strain ERS1305867

37.94

97.549

0.37