Detailed information    

insolico Bioinformatically predicted

Overview

Name   comX/sigX/comX2/sigX2   Type   Regulator
Locus tag   VB13_RS07375 Genome accession   NZ_CP077685
Coordinates   1488813..1489364 (-) Length   183 a.a.
NCBI ID   WP_010921894.1    Uniprot ID   -
Organism   Streptococcus pyogenes strain M49 591     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1483813..1494364
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  VB13_RS07350 (VB13_07575) - 1485183..1486028 (+) 846 WP_219050287.1 mechanosensitive ion channel family protein -
  VB13_RS07355 (VB13_07580) - 1486093..1486653 (-) 561 WP_009880946.1 TIGR01440 family protein -
  VB13_RS07360 (VB13_07585) - 1486667..1487137 (-) 471 WP_009880947.1 ECF transporter S component -
  VB13_RS07365 (VB13_07590) - 1487127..1487891 (-) 765 WP_009880948.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  VB13_RS07370 (VB13_07595) truA 1487881..1488630 (-) 750 WP_219050289.1 tRNA pseudouridine(38-40) synthase TruA -
  VB13_RS07375 (VB13_07600) comX/sigX/comX2/sigX2 1488813..1489364 (-) 552 WP_010921894.1 sigma-70 family RNA polymerase sigma factor Regulator

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 22281.08 Da        Isoelectric Point: 10.0375

>NTDB_id=582254 VB13_RS07375 WP_010921894.1 1488813..1489364(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain M49 591]
MSCCFFVVLFILGIVKKKRRLKMSIETRAAFEKVKPIILKLKRHYYIQLWDRDDWLQEGHIILLQLLERYPELIEEEERL
YRYFKTKFSSYLKDLLRRQESQKRQFHKLAYEEIGEVAHAIPSRGLWLDDYVAYQEVIASLENQLNSQERMQFQALIRGE
RFKGRRALLRKISPYFKEFAQQL

Nucleotide


Download         Length: 552 bp        

>NTDB_id=582254 VB13_RS07375 WP_010921894.1 1488813..1489364(-) (comX/sigX/comX2/sigX2) [Streptococcus pyogenes strain M49 591]
ATGTCCTGTTGTTTTTTTGTGGTTCTCTTTATACTAGGGATAGTTAAAAAGAAAAGGAGACTCAAAATGTCGATAGAGAC
AAGAGCAGCGTTTGAAAAAGTTAAGCCCATTATTTTGAAATTAAAGCGACACTATTATATTCAATTGTGGGATAGAGATG
ACTGGTTACAAGAAGGACATATTATTTTATTACAGTTACTAGAAAGGTACCCAGAGTTAATTGAGGAAGAAGAGCGTTTA
TATCGCTATTTTAAAACAAAATTTTCATCTTATTTGAAAGATTTATTACGCCGTCAAGAAAGTCAAAAGCGTCAGTTCCA
TAAGTTAGCATATGAAGAGATAGGGGAGGTTGCACATGCCATTCCATCGAGAGGGTTATGGCTAGACGACTATGTGGCTT
ATCAAGAGGTAATAGCTAGCTTAGAGAACCAATTAAATTCGCAAGAGCGTATGCAGTTTCAAGCACTTATCAGGGGCGAA
CGTTTCAAGGGAAGACGTGCTCTACTTAGGAAGATCAGTCCCTATTTTAAGGAATTTGCACAGCAGTTGTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.