Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   KS242_RS17315 Genome accession   NZ_CP077639
Coordinates   3389284..3389790 (-) Length   168 a.a.
NCBI ID   WP_217322479.1    Uniprot ID   -
Organism   Terribacillus sp. DMT04     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 3384284..3394790
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KS242_RS17295 (KS242_17295) - 3384984..3386144 (-) 1161 WP_217322476.1 alanine--glyoxylate aminotransferase family protein -
  KS242_RS17300 (KS242_17300) - 3386628..3387347 (+) 720 WP_217322477.1 NAD-dependent protein deacylase -
  KS242_RS17305 (KS242_17305) - 3387377..3388807 (-) 1431 WP_217322478.1 MDR family MFS transporter -
  KS242_RS17310 (KS242_17310) rpsR 3389033..3389263 (-) 231 WP_077306011.1 30S ribosomal protein S18 -
  KS242_RS17315 (KS242_17315) ssbA 3389284..3389790 (-) 507 WP_217322479.1 single-stranded DNA-binding protein Machinery gene
  KS242_RS17320 (KS242_17320) rpsF 3389803..3390093 (-) 291 WP_217322480.1 30S ribosomal protein S6 -
  KS242_RS17325 (KS242_17325) ychF 3390246..3391346 (-) 1101 WP_217322481.1 redox-regulated ATPase YchF -
  KS242_RS17330 (KS242_17330) - 3391675..3391884 (-) 210 WP_217322482.1 DUF951 domain-containing protein -
  KS242_RS17335 (KS242_17335) - 3391877..3392797 (-) 921 WP_217322483.1 mechanosensitive ion channel family protein -
  KS242_RS17340 (KS242_17340) - 3392844..3393863 (-) 1020 WP_217322484.1 hypothetical protein -
  KS242_RS17345 (KS242_17345) yyaC 3393951..3394544 (+) 594 WP_217322485.1 spore protease YyaC -

Sequence

Protein


Download         Length: 168 a.a.        Molecular weight: 18669.18 Da        Isoelectric Point: 4.5673

>NTDB_id=581835 KS242_RS17315 WP_217322479.1 3389284..3389790(-) (ssbA) [Terribacillus sp. DMT04]
MLNRVVLVGRLTKDPDLRYTPNGVAVANFTLAVNRPFSNQSGEREADFINCVVWRRPAENLANFMSKGSLVGVDGRVQTR
SFDNQEGNRVFVTEIVADSVQFLESKGASQGGGQGSSGYQNQNSNFNNNNNNFNSNNNNYNQNQNNNNQDPFRDKGEPID
ISDDDLPF

Nucleotide


Download         Length: 507 bp        

>NTDB_id=581835 KS242_RS17315 WP_217322479.1 3389284..3389790(-) (ssbA) [Terribacillus sp. DMT04]
ATGTTAAATCGTGTCGTACTTGTCGGCAGATTAACCAAGGATCCGGACCTGCGTTATACACCAAATGGAGTGGCAGTTGC
TAACTTTACCTTAGCAGTAAACCGACCTTTCTCTAATCAGTCAGGCGAACGTGAGGCAGATTTCATTAACTGTGTTGTAT
GGAGACGCCCAGCTGAAAATCTGGCGAACTTCATGAGCAAAGGAAGTCTGGTTGGCGTAGATGGCCGTGTTCAAACGAGG
AGTTTCGATAACCAGGAAGGAAATCGTGTCTTTGTAACGGAAATCGTTGCAGACAGCGTGCAATTCCTTGAATCGAAAGG
TGCTTCTCAAGGAGGCGGACAAGGTTCTTCTGGATACCAAAATCAGAACTCGAACTTTAATAACAACAATAATAATTTCA
ATAGCAATAACAATAATTACAATCAAAATCAGAATAACAATAATCAGGATCCTTTCCGAGATAAAGGTGAACCGATCGAT
ATTTCTGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

66.286

100

0.69
  ssb Latilactobacillus sakei subsp. sakei 23K

57.895

100

0.589
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

63.095

0.405
  ssb Glaesserella parasuis strain SC1401

35.912

100

0.387