Detailed information NTG0581274

Bioinformatically predicted

Overview

• Name: comYD
• Type: Machinery gene
• Locus tag: I6L88_RS00035
• Genome accession: NZ_CP077404
• Coordinates: 10391..10795 (+)
• Length: 134 a.a.
• NCBI ID: WP_002264246.1
• Uniprot ID: -
• Organism: Streptococcus mutans strain FDAARGOS 1458
• Function: dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 5391..15795

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
I6L88_RS00015 (I6L88_00015)	-	7669..8052 (+)	384	WP_002264248.1	DUF1033 family protein	-
I6L88_RS00020 (I6L88_00020)	comYA	8182..9123 (+)	942	WP_002264247.1	competence type IV pilus ATPase ComGA	Machinery gene
I6L88_RS00025 (I6L88_00025)	comYB	9059..10090 (+)	1032	WP_255262721.1	competence type IV pilus assembly protein ComGB	Machinery gene
I6L88_RS00030 (I6L88_00030)	comYC	10090..10404 (+)	315	WP_002263437.1	competence type IV pilus major pilin ComGC	Machinery gene
I6L88_RS00035 (I6L88_00035)	comYD	10391..10795 (+)	405	WP_002264246.1	competence type IV pilus minor pilin ComGD	Machinery gene
I6L88_RS00040 (I6L88_00040)	comYE	10767..11060 (+)	294	WP_002263439.1	competence type IV pilus minor pilin ComGE	Machinery gene
I6L88_RS00045 (I6L88_00045)	comYF	11047..11481 (+)	435	WP_002264245.1	competence type IV pilus minor pilin ComGF	Machinery gene
I6L88_RS00050 (I6L88_00050)	comYG	11459..11848 (+)	390	WP_002263441.1	competence type IV pilus minor pilin ComGG	Machinery gene
I6L88_RS00055 (I6L88_00055)	comYH	11903..12856 (+)	954	WP_002264244.1	class I SAM-dependent methyltransferase	Machinery gene
I6L88_RS00060 (I6L88_00060)	-	12915..14114 (+)	1200	WP_002263443.1	acetate kinase	-
I6L88_RS00065 (I6L88_00065)	-	14667..14912 (+)	246	WP_002263444.1	helix-turn-helix transcriptional regulator	-
I6L88_RS00070 (I6L88_00070)	-	14881..15321 (+)	441	WP_002263445.1	hypothetical protein	-

Sequence

Protein

• Length: 134 a.a.
• Molecular weight: 15425.73 Da
• Isoelectric Point: 9.2271

>NTDB_id=581274 I6L88_RS00035 WP_002264246.1 10391..10795(+) (comYD) [Streptococcus mutans strain FDAARGOS 1458]
MSRIKAFTLIESLVTLAITSFLILSFSGSITQTFAKVEEHLFFLSFEHLYRDTQKLSVYQRQDMTLILKSEYISNGVEVL
KIPKDVKLERNKTLHFDQAGGNSSLEKLVFQTSDEKRVTYQLYIGSGQYKKTES

Nucleotide

• Length: 405 bp

>NTDB_id=581274 I6L88_RS00035 WP_002264246.1 10391..10795(+) (comYD) [Streptococcus mutans strain FDAARGOS 1458]
ATGTCGCGAATTAAAGCTTTTACGCTTATAGAAAGTTTAGTGACTTTGGCAATTACTAGTTTTTTGATTTTAAGCTTTTC
AGGTAGTATAACTCAAACGTTTGCCAAAGTAGAAGAGCATCTCTTTTTTCTTTCTTTTGAACATCTTTACCGTGACACGC
AAAAACTTAGTGTTTATCAAAGACAAGATATGACTTTAATATTAAAAAGCGAATATATCTCAAATGGTGTTGAAGTACTT
AAAATCCCTAAGGATGTCAAACTAGAGAGGAATAAAACTTTGCACTTTGATCAGGCAGGAGGAAATTCTTCTTTAGAAAA
ACTTGTTTTTCAAACATCTGATGAAAAAAGAGTTACTTATCAATTATATATAGGAAGTGGTCAGTATAAAAAAACAGAAA
GTTAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (1-25)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comYD	Streptococcus mutans UA140	99.254	100	0.993
comYD	Streptococcus mutans UA159	99.254	100	0.993
comYD	Streptococcus gordonii str. Challis substr. CH1	50.388	96.269	0.485
comGD/cglD	Streptococcus mitis NCTC 12261	49.612	96.269	0.478
comGD/cglD	Streptococcus pneumoniae Rx1	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae D39	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae R6	49.219	95.522	0.47
comGD/cglD	Streptococcus pneumoniae TIGR4	48.438	95.522	0.463
comGD/cglD	Streptococcus mitis SK321	48.438	95.522	0.463
comGD	Lactococcus lactis subsp. cremoris KW2	39.394	98.507	0.388