Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYG   Type   Machinery gene
Locus tag   I6L88_RS00050 Genome accession   NZ_CP077404
Coordinates   11459..11848 (+) Length   129 a.a.
NCBI ID   WP_002263441.1    Uniprot ID   -
Organism   Streptococcus mutans strain FDAARGOS 1458     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6459..16848
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L88_RS00015 (I6L88_00015) - 7669..8052 (+) 384 WP_002264248.1 DUF1033 family protein -
  I6L88_RS00020 (I6L88_00020) comYA 8182..9123 (+) 942 WP_002264247.1 competence type IV pilus ATPase ComGA Machinery gene
  I6L88_RS00025 (I6L88_00025) comYB 9059..10090 (+) 1032 WP_255262721.1 competence type IV pilus assembly protein ComGB Machinery gene
  I6L88_RS00030 (I6L88_00030) comYC 10090..10404 (+) 315 WP_002263437.1 competence type IV pilus major pilin ComGC Machinery gene
  I6L88_RS00035 (I6L88_00035) comYD 10391..10795 (+) 405 WP_002264246.1 competence type IV pilus minor pilin ComGD Machinery gene
  I6L88_RS00040 (I6L88_00040) comYE 10767..11060 (+) 294 WP_002263439.1 competence type IV pilus minor pilin ComGE Machinery gene
  I6L88_RS00045 (I6L88_00045) comYF 11047..11481 (+) 435 WP_002264245.1 competence type IV pilus minor pilin ComGF Machinery gene
  I6L88_RS00050 (I6L88_00050) comYG 11459..11848 (+) 390 WP_002263441.1 competence type IV pilus minor pilin ComGG Machinery gene
  I6L88_RS00055 (I6L88_00055) comYH 11903..12856 (+) 954 WP_002264244.1 class I SAM-dependent methyltransferase Machinery gene
  I6L88_RS00060 (I6L88_00060) - 12915..14114 (+) 1200 WP_002263443.1 acetate kinase -
  I6L88_RS00065 (I6L88_00065) - 14667..14912 (+) 246 WP_002263444.1 helix-turn-helix transcriptional regulator -
  I6L88_RS00070 (I6L88_00070) - 14881..15321 (+) 441 WP_002263445.1 hypothetical protein -
  I6L88_RS00075 (I6L88_00075) - 15374..16036 (+) 663 WP_002266816.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 129 a.a.        Molecular weight: 14954.27 Da        Isoelectric Point: 10.2940

>NTDB_id=581277 I6L88_RS00050 WP_002263441.1 11459..11848(+) (comYG) [Streptococcus mutans strain FDAARGOS 1458]
MLFMKKIKAGVLLYALFMSAIFSLFLQFYLNRVVATERQNQAQLSASKAYLIADLTQDLAKDNFGQLTFNHGRSSYHKQE
GELLIKVHLTDGQSYQYRFNCVTENKEKGKFSVANKTFTKSIEKRHFQK

Nucleotide


Download         Length: 390 bp        

>NTDB_id=581277 I6L88_RS00050 WP_002263441.1 11459..11848(+) (comYG) [Streptococcus mutans strain FDAARGOS 1458]
ATGCTTTTCATGAAAAAAATTAAAGCAGGCGTACTTCTATATGCTCTGTTTATGTCAGCAATCTTTAGTCTTTTCTTACA
ATTTTATCTTAATCGTGTTGTAGCAACAGAGAGACAAAATCAGGCACAATTATCGGCCAGTAAAGCTTATCTTATAGCAG
ATCTAACTCAAGATTTGGCTAAAGACAACTTTGGGCAGTTGACTTTTAATCACGGAAGGTCTAGTTATCATAAACAGGAG
GGGGAACTTCTGATAAAAGTCCATTTGACAGATGGTCAGTCCTACCAATATCGTTTTAACTGTGTAACAGAAAATAAGGA
AAAAGGAAAATTTAGTGTGGCTAATAAAACTTTTACTAAATCTATAGAAAAACGTCATTTTCAAAAATAG

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYG Streptococcus mutans UA140

100

100

1
  comYG Streptococcus mutans UA159

100

100

1