Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   I6L30_RS12505 Genome accession   NZ_CP077365
Coordinates   2646568..2648694 (+) Length   708 a.a.
NCBI ID   WP_049065605.1    Uniprot ID   -
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2641568..2653694
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS12485 (I6L30_12485) pilM 2643529..2644587 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  I6L30_RS12490 (I6L30_12490) pilN 2644587..2645231 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  I6L30_RS12495 (I6L30_12495) pilO 2645228..2645968 (+) 741 WP_216984454.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L30_RS12500 (I6L30_12500) pilP 2645979..2646506 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  I6L30_RS12505 (I6L30_12505) pilQ 2646568..2648694 (+) 2127 WP_049065605.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L30_RS12510 (I6L30_12510) aroK 2648706..2649275 (+) 570 WP_004705195.1 shikimate kinase AroK -
  I6L30_RS12515 (I6L30_12515) aroB 2649304..2650386 (+) 1083 WP_216984455.1 3-dehydroquinate synthase -
  I6L30_RS12520 (I6L30_12520) - 2650402..2651276 (+) 875 Protein_2460 hypothetical protein -

Sequence

Protein


Download         Length: 708 a.a.        Molecular weight: 76582.04 Da        Isoelectric Point: 6.5725

>NTDB_id=580937 I6L30_RS12505 WP_049065605.1 2646568..2648694(+) (pilQ) [Acinetobacter seifertii strain FDAARGOS 1400]
MNQVFRQFSMGAVAIAIMQAASAQVSMTNIVPTQIAGQGTEIRVMFNGLPPQPQAYQLENPSRLILDFDKAQQSLKQSKI
AVATNEASSVDVTSDDVRSRLTVNLKDAGAFTTRVEGNTFILKINSAQTTNKPIPAATAQPQGVSNIGFQRGSQGEGLVV
VDLLGSNTPVDVQQQGSKVVIRTLGTKIPTHLARRLNVNDFATPVSSIDAYNEKGAGVITIQSSGSYEYMAYQAENKLTI
SLKRPQDKSTSASYKAPSYSGNKLSLDFQDIEVRRVLQLLADFTGINMVAADSVQGNITLRLKDVPWDQALDIILKTKNL
DKRRNGNVIWIAPVTELIKAEDDEAKALAQTIKLAPIQTDYIRLSYAKAIDVLKLIEDTRDGKGAVANRTANSDSLALES
LLSSRGSAVADSRTNTLIVNDTAQNIDKVRKMIELLDVQVKQVMVEARIVRASTSFTKELGVKWGILSQGITNNKNLLVG
GSETTLWNLRDPKKDETTGGYKYTIERPDNLNVDLGVSNPAGSIAFGLISMSDFMLDLELSALQADGYGEVISTPKVMTA
DKQTAKVATGQQVPYLTTTISGAGSAATTSFKDALLSLDVTPSITPDGKIQMKLDISKDSVAGEAPNGELILNKNNINTN
VLVDNGETVILGGVFEQTTTNTQTKVPFFGDIPLVGRLFRKDVKSDDKQELLIFVTPRIVNDTLARNH

Nucleotide


Download         Length: 2127 bp        

>NTDB_id=580937 I6L30_RS12505 WP_049065605.1 2646568..2648694(+) (pilQ) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGAATCAGGTATTCCGTCAGTTTTCTATGGGGGCTGTAGCGATTGCAATTATGCAGGCTGCATCTGCACAGGTCAGCAT
GACCAATATTGTACCAACGCAAATTGCAGGTCAGGGTACAGAAATTAGAGTCATGTTTAATGGTTTGCCTCCACAGCCAC
AAGCTTACCAACTTGAAAACCCTTCGCGTTTAATACTAGATTTTGATAAAGCGCAACAAAGTTTAAAGCAGTCTAAAATT
GCTGTTGCAACGAATGAAGCAAGTTCCGTTGATGTGACTTCAGATGATGTACGTTCACGCTTAACTGTAAATCTAAAAGA
TGCTGGTGCTTTTACAACGCGCGTGGAAGGCAATACTTTTATTCTAAAAATTAATTCAGCTCAAACAACGAATAAACCGA
TACCAGCAGCTACCGCACAACCACAAGGTGTTTCAAATATTGGCTTTCAGCGTGGTAGTCAGGGAGAAGGTTTAGTTGTT
GTCGATCTTTTGGGAAGTAATACACCTGTAGATGTTCAACAACAAGGCAGTAAGGTTGTTATAAGAACATTAGGTACAAA
GATTCCGACACATTTAGCACGTCGTTTAAATGTAAATGATTTTGCAACGCCCGTATCAAGTATCGATGCTTATAATGAAA
AAGGTGCTGGTGTAATCACAATTCAGTCATCTGGTAGTTATGAATATATGGCTTATCAAGCTGAAAATAAGCTCACTATT
AGTTTGAAACGTCCACAAGATAAAAGTACATCAGCTTCGTATAAAGCACCAAGTTATTCTGGTAATAAGCTTTCATTAGA
CTTCCAAGACATTGAAGTGCGTCGTGTATTACAGTTGCTTGCCGATTTTACAGGCATCAATATGGTGGCTGCTGATAGTG
TGCAAGGTAACATCACGCTACGTTTGAAAGATGTACCTTGGGATCAAGCACTAGATATTATTTTAAAAACTAAAAATCTT
GATAAACGTCGTAATGGAAATGTAATTTGGATTGCTCCTGTTACTGAATTAATTAAAGCAGAAGATGATGAGGCAAAAGC
CTTAGCTCAAACGATTAAGTTAGCGCCAATCCAAACAGATTATATTCGTTTGAGTTATGCGAAAGCGATTGATGTGCTTA
AGTTGATTGAAGATACTCGTGATGGTAAAGGTGCAGTTGCAAATCGTACCGCAAACTCTGATTCTCTTGCGTTGGAGAGC
TTATTAAGTTCACGTGGTAGTGCTGTTGCTGATAGTCGAACTAATACTTTGATTGTAAATGATACAGCACAAAATATTGA
TAAAGTTCGTAAAATGATTGAACTACTTGATGTGCAAGTTAAGCAGGTGATGGTTGAAGCGCGTATCGTCAGAGCGTCTA
CGTCATTTACTAAAGAACTTGGAGTTAAGTGGGGTATTCTTTCACAAGGTATTACTAATAATAAAAATTTATTGGTTGGT
GGTAGTGAAACAACTTTATGGAATTTACGTGACCCTAAAAAAGATGAAACTACTGGAGGCTATAAATATACCATCGAACG
TCCAGATAACTTAAACGTTGATTTGGGAGTCTCTAATCCGGCGGGAAGTATTGCCTTTGGTCTTATCAGTATGTCTGATT
TTATGTTAGATCTTGAACTCTCAGCTTTACAGGCTGATGGTTATGGTGAAGTCATTTCAACCCCTAAAGTCATGACTGCC
GATAAGCAAACTGCAAAAGTTGCCACGGGTCAACAAGTTCCTTATCTAACGACAACGATATCTGGTGCGGGTTCAGCAGC
CACAACATCATTTAAAGATGCTCTTTTAAGTCTTGATGTTACACCTAGCATTACGCCTGACGGTAAAATTCAAATGAAAT
TAGATATTTCTAAGGATTCTGTAGCGGGTGAAGCGCCAAATGGTGAGTTAATTCTGAATAAGAATAATATTAATACCAAT
GTGCTGGTTGATAACGGAGAAACCGTCATTTTAGGTGGTGTATTCGAGCAAACAACGACAAATACTCAAACTAAAGTTCC
ATTCTTTGGGGATATTCCTTTAGTTGGGCGTTTATTTAGAAAAGATGTAAAGTCTGATGATAAACAAGAGTTACTGATTT
TCGTAACACCACGAATTGTTAATGACACTTTGGCGAGAAATCATTAA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(542-700)

AMIN domain (AMIN)

(39-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(361-442)

Secretin and TonB N terminus short domain (STN)

(291-333)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Acinetobacter baumannii D1279779

87.656

100

0.893
  pilQ Acinetobacter baumannii strain A118

87.517

100

0.891
  comQ Acinetobacter baylyi ADP1

72.765

100

0.736
  pilQ Pseudomonas aeruginosa PAK

39.915

99.435

0.397