Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   I6L30_RS12490 Genome accession   NZ_CP077365
Coordinates   2644587..2645231 (+) Length   214 a.a.
NCBI ID   WP_077163636.1    Uniprot ID   A0A2M8MMB9
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2639587..2650231
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS12470 (I6L30_12470) - 2639636..2639968 (+) 333 WP_077163639.1 hypothetical protein -
  I6L30_RS12475 (I6L30_12475) - 2639971..2640795 (+) 825 WP_216984452.1 putative RNA methyltransferase -
  I6L30_RS12480 (I6L30_12480) ponA 2640812..2643367 (-) 2556 WP_216984453.1 penicillin-binding protein PBP1a -
  I6L30_RS12485 (I6L30_12485) pilM 2643529..2644587 (+) 1059 WP_004705187.1 pilus assembly protein PilM Machinery gene
  I6L30_RS12490 (I6L30_12490) pilN 2644587..2645231 (+) 645 WP_077163636.1 PilN domain-containing protein Machinery gene
  I6L30_RS12495 (I6L30_12495) pilO 2645228..2645968 (+) 741 WP_216984454.1 type 4a pilus biogenesis protein PilO Machinery gene
  I6L30_RS12500 (I6L30_12500) pilP 2645979..2646506 (+) 528 WP_004705193.1 pilus assembly protein PilP Machinery gene
  I6L30_RS12505 (I6L30_12505) pilQ 2646568..2648694 (+) 2127 WP_049065605.1 type IV pilus secretin PilQ family protein Machinery gene
  I6L30_RS12510 (I6L30_12510) aroK 2648706..2649275 (+) 570 WP_004705195.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24113.45 Da        Isoelectric Point: 5.1326

>NTDB_id=580934 I6L30_RS12490 WP_077163636.1 2644587..2645231(+) (pilN) [Acinetobacter seifertii strain FDAARGOS 1400]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLITSTNQNLDQQLKALNGLQEQRDA
IIERMKLIQDLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
TEDKKDKAASSLLPRVEDNYGSFVVTVDLGEMGVTTADNNADKPAVAKDTGAAK

Nucleotide


Download         Length: 645 bp        

>NTDB_id=580934 I6L30_RS12490 WP_077163636.1 2644587..2645231(+) (pilN) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGGCAACAATTAATTTACTACCTTGGCGTGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGCTTTGG
GGTGGTTGTGTTAGGAATTACAACCGTATTTGGAGGGTGGTTCTATTTTGATCATAAATTAGATGATCAAGAACAAGCAA
ATCAACTTATTACAAGTACTAATCAAAACCTTGATCAGCAATTAAAAGCATTAAATGGTTTACAAGAACAACGTGATGCC
ATCATTGAGCGTATGAAATTGATTCAAGATTTACAGAGTCAGCGTCCAGTCGTGGTAAGACTGGTTGATGAGTTAGTAAG
AGTCACGCCGCCTGCAATGTATTTAACGAAATTTAGCCGAACTGGGGATAAATTTACGATTGAAGGTAAAGCTGAAAGTC
CAAATACGGTAGCTGAACTACTGCGTAATCTTGAAGCATCTCCTTGGTATCGAAATGCTTTTATGAACTCTTTCTTGGCG
ACTGAAGATAAAAAAGATAAGGCAGCAAGTTCTCTTCTTCCTAGGGTAGAAGATAATTACGGTAGTTTTGTTGTGACTGT
CGATTTAGGGGAAATGGGCGTGACCACAGCTGATAATAATGCTGATAAACCAGCCGTAGCTAAAGATACGGGGGCAGCAA
AATGA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-166)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2M8MMB9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

92.056

100

0.921
  comN Acinetobacter baylyi ADP1

70.616

98.598

0.696