Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   I6L30_RS11945 Genome accession   NZ_CP077365
Coordinates   2542406..2542993 (+) Length   195 a.a.
NCBI ID   WP_004705007.1    Uniprot ID   N8SBP5
Organism   Acinetobacter seifertii strain FDAARGOS 1400     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2537406..2547993
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  I6L30_RS11920 (I6L30_11920) - 2537479..2538285 (-) 807 WP_216984412.1 SDR family NAD(P)-dependent oxidoreductase -
  I6L30_RS11925 (I6L30_11925) - 2538389..2538760 (-) 372 WP_216984413.1 MerR family transcriptional regulator -
  I6L30_RS11930 (I6L30_11930) tenA 2538825..2539499 (-) 675 WP_216984414.1 thiaminase II -
  I6L30_RS11935 (I6L30_11935) - 2539762..2540844 (+) 1083 WP_216984415.1 DUF475 domain-containing protein -
  I6L30_RS11940 (I6L30_11940) - 2540991..2542355 (+) 1365 WP_216984416.1 MFS transporter -
  I6L30_RS11945 (I6L30_11945) ssb 2542406..2542993 (+) 588 WP_004705007.1 single-stranded DNA-binding protein Machinery gene
  I6L30_RS11950 (I6L30_11950) - 2543034..2543357 (-) 324 WP_049064733.1 AzlD domain-containing protein -
  I6L30_RS11955 (I6L30_11955) - 2543354..2544049 (-) 696 WP_216984417.1 AzlC family ABC transporter permease -
  I6L30_RS11960 (I6L30_11960) - 2544118..2544666 (+) 549 WP_002117406.1 helix-turn-helix domain-containing protein -
  I6L30_RS11965 (I6L30_11965) - 2544972..2546414 (+) 1443 WP_004705034.1 amino acid permease -
  I6L30_RS11970 (I6L30_11970) - 2546479..2547978 (-) 1500 WP_019458488.1 PLP-dependent aminotransferase family protein -

Sequence

Protein


Download         Length: 195 a.a.        Molecular weight: 21137.90 Da        Isoelectric Point: 6.4822

>NTDB_id=580932 I6L30_RS11945 WP_004705007.1 2542406..2542993(+) (ssb) [Acinetobacter seifertii strain FDAARGOS 1400]
MRGVNKVILVGTLGRDPETKTFPNGGSLTQFSIATSESWTDKNTGERKEQTEWHRIVLHNRLGEIAQQFLRKGSKVYIEG
SLRTRQWTDQNGQERYTTEIRGDQMQMLDARQQGEQGFAGGNDFNQPRFNAPQQGGGYQNNNNQGGGYGQNNGGGYGGQG
GFGNGGNSPQGGGFAPKAPQQPASAPADLDDDLPF

Nucleotide


Download         Length: 588 bp        

>NTDB_id=580932 I6L30_RS11945 WP_004705007.1 2542406..2542993(+) (ssb) [Acinetobacter seifertii strain FDAARGOS 1400]
ATGCGTGGTGTAAATAAGGTTATTTTGGTTGGTACTTTGGGTCGTGATCCTGAAACAAAAACTTTTCCAAATGGGGGCTC
GTTGACCCAATTTTCGATCGCGACAAGTGAATCTTGGACTGATAAAAATACAGGTGAACGTAAAGAACAAACAGAATGGC
ACCGTATTGTTTTGCATAACCGTTTAGGGGAAATTGCTCAGCAGTTTTTACGTAAAGGTTCTAAGGTTTACATTGAAGGT
TCATTACGTACACGTCAATGGACAGATCAAAATGGCCAAGAGCGTTATACGACAGAAATCCGTGGCGACCAGATGCAAAT
GTTAGATGCTCGTCAACAAGGTGAACAAGGTTTCGCTGGCGGTAATGATTTTAATCAACCACGTTTTAACGCACCTCAAC
AAGGTGGCGGTTATCAAAATAATAACAACCAAGGTGGCGGCTACGGTCAAAACAATGGCGGTGGTTATGGTGGCCAAGGT
GGTTTCGGTAATGGTGGCAATAGCCCGCAAGGTGGTGGTTTTGCTCCTAAAGCGCCGCAACAACCAGCGTCTGCACCAGC
TGATTTAGACGATGATTTACCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(4-108)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N8SBP5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Glaesserella parasuis strain SC1401

51.691

100

0.549
  ssb Vibrio cholerae strain A1552

44.335

100

0.462
  ssb Neisseria meningitidis MC58

37.879

100

0.385
  ssb Neisseria gonorrhoeae MS11

37.879

100

0.385