Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HU739_RS15530 Genome accession   NZ_CP077091
Coordinates   3602120..3604198 (-) Length   692 a.a.
NCBI ID   WP_186549535.1    Uniprot ID   A0A9E6NVV7
Organism   Pseudomonas hamedanensis strain SWRI65     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3597120..3609198
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HU739_RS15515 (HU739_015515) - 3598729..3600333 (-) 1605 WP_186549524.1 AAA family ATPase -
  HU739_RS15520 (HU739_015520) aroB 3600344..3601444 (-) 1101 WP_186549526.1 3-dehydroquinate synthase -
  HU739_RS15525 (HU739_015525) aroK 3601597..3602115 (-) 519 WP_186549533.1 shikimate kinase AroK -
  HU739_RS15530 (HU739_015530) pilQ 3602120..3604198 (-) 2079 WP_186549535.1 type IV pilus secretin PilQ Machinery gene
  HU739_RS15535 (HU739_015535) - 3604212..3604739 (-) 528 WP_186549537.1 pilus assembly protein PilP -
  HU739_RS15540 (HU739_015540) pilO 3604736..3605359 (-) 624 WP_186549539.1 type 4a pilus biogenesis protein PilO -
  HU739_RS15545 (HU739_015545) - 3605356..3605922 (-) 567 WP_186549541.1 PilN domain-containing protein -
  HU739_RS15550 (HU739_015550) pilM 3605922..3606986 (-) 1065 WP_186549543.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 75029.42 Da        Isoelectric Point: 5.4130

>NTDB_id=579077 HU739_RS15530 WP_186549535.1 3602120..3604198(-) (pilQ) [Pseudomonas hamedanensis strain SWRI65]
MNRIFSTLGFSLWIALMSPMVLAANLKTLDVAALPGDRVELKLAFDGPPPQPKGYTTESPARIALDLPGVTSQLANKTLD
LGSGNARTATVAEAKDRTRLIVSLTQLAPYSTRVEGNNLFVVVGQGAPAAAPRTAAVAPRATPAATAPAKPSVPRNRAIR
GVDFQRGTEGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPEKLRVRLDVKDFATPVQFVNAAVTGDRAVISVEPSG
TFDYSTFQTDNKLTVSIRPMTVDDLQKRNADRNSYVGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KIDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNASGVN
GSSTTIGTPGSTSTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=579077 HU739_RS15530 WP_186549535.1 3602120..3604198(-) (pilQ) [Pseudomonas hamedanensis strain SWRI65]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGATGTCGCCGATGGTACTCGCGGCCAACCTGAA
GACGCTGGACGTAGCGGCGTTGCCAGGGGACCGTGTCGAACTGAAGCTGGCGTTCGACGGCCCGCCACCGCAGCCCAAGG
GTTACACCACTGAATCGCCAGCGCGGATCGCCCTTGATCTGCCCGGCGTCACCAGTCAGCTGGCGAACAAGACGCTTGAT
CTGGGCAGCGGCAATGCGCGCACCGCGACGGTGGCGGAAGCCAAGGACCGCACGCGCCTGATTGTCAGTCTGACGCAACT
GGCGCCTTACAGTACTCGAGTCGAGGGAAACAATCTGTTCGTGGTGGTCGGACAGGGCGCGCCTGCTGCTGCGCCGCGCA
CTGCGGCGGTTGCGCCCCGTGCCACCCCGGCGGCGACAGCGCCTGCCAAACCGTCCGTGCCGCGTAATCGCGCCATTCGC
GGCGTCGACTTCCAGCGGGGTACGGAGGGCGAGGGCAATGTGGTGATCGACCTGTCCGACCCGACCATCGCCCCGGACAT
CCAGGAGCATGACGGCAAGATCATTCTCAGCTTCGCCCGCACGCAATTGCCGGAAAAACTGCGCGTGCGCCTCGACGTCA
AGGACTTCGCCACCCCCGTGCAGTTCGTCAACGCCGCGGTGACCGGGGATCGCGCGGTGATCAGCGTCGAGCCCAGCGGC
ACGTTCGACTATTCCACCTTCCAGACCGACAACAAACTCACGGTCAGCATTCGTCCGATGACGGTGGACGACCTGCAAAA
ACGCAACGCTGACCGCAACAGCTATGTGGGCGAAAAGCTCTCGCTGAACTTCCAGGACATCGACGTGCGTTCGGTGCTGC
AGCTGATCGCCGATTTCACCAACCTCAATCTGGTCGCCAGCGACACGGTGCAGGGCGGCATCACCTTGCGTCTGCAGAAC
GTACCGTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAAGGCCTGGATAAACGCAAGATCGGCAACGTGTTGCTGGT
GGCGCCGGCCGATGAAATCGCGGCTCGCGAGCGTCAGGAGCTGGAATCGCAGAAGCAGATCGCCGAGCTGGCGCCGCTGC
GCCGCGAATTGCTGCAGGTGAACTACGCCAAGGCGGCGGACATCGCCAAGCTGTTCCAGTCTGTGACCAGTGCCGAGGCG
AAAATCGATGAGCGCGGTTCCATCACCGTCGATGAGCGAACCAACAACATCATCGCCTACCAGACTCAGGATCGCCTCGA
CGAACTGCGGCGGATCGTGGCGCAACTGGATATTCCGGTGCGTCAGGTGATGATCGAGGCGCGGATCGTCGAAGCCAACG
TCGATTACGACAAAAGCCTCGGCGTGCGCTGGGGCGGCTCGATTCAAAACAAGGGCAACTGGAACGCCTCAGGGGTCAAC
GGTTCGTCGACGACCATCGGTACGCCGGGGAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGCACCGTCAACAACAC
CTCCGGTATCGGCATCGCCTTCATTACCGACAACGTTCTGCTCGACCTCGAGTTGACGGCCATGGAGAAGACCGGCAACG
GTGAGATCGTGTCACAACCCAAAGTGGTGACTTCCGACAAGGAGACCGCAAAAATCCTCAAGGGCACCGAAATTCCGTAT
CAGGAAGCCAGTTCCAGTGGCGCGACCTCGGTATCGTTCAAGGAGGCTTCGCTGTCGCTGGAAGTGACCCCGCAGATCAC
TCCGGATAACCGCATCATCATGGAGGTCAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTGCCGC
CGATCAAGAAAAACGAGGTCAACGCCAAGGTGCTGGTCAACGACGGCGAAACCATCGTGATTGGCGGTGTTTTTTCAAAT
ACTCAGAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II and III secretion system protein (Secretin)

(527-683)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

AMIN domain (AMIN)

(37-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.346

100

0.749
  comQ Acinetobacter baylyi ADP1

41.354

100

0.415
  pilQ Acinetobacter baumannii D1279779

37.668

100

0.406
  pilQ Acinetobacter baumannii strain A118

37.668

100

0.406
  pilQ Legionella pneumophila strain ERS1305867

37.962

97.832

0.371
  pilQ Legionella pneumophila strain Lp02

37.85

98.121

0.371