Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   HV782_RS03085 Genome accession   NZ_CP077087
Coordinates   708671..710752 (+) Length   693 a.a.
NCBI ID   WP_186746219.1    Uniprot ID   -
Organism   Pseudomonas monsensis strain PGSB 8459     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 703671..715752
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HV782_RS03065 (HV782_003065) pilM 705883..706947 (+) 1065 WP_123470753.1 pilus assembly protein PilM Machinery gene
  HV782_RS03070 (HV782_003070) - 706947..707513 (+) 567 WP_128615714.1 PilN domain-containing protein -
  HV782_RS03075 (HV782_003075) pilO 707510..708133 (+) 624 WP_186746221.1 type 4a pilus biogenesis protein PilO -
  HV782_RS03080 (HV782_003080) - 708130..708657 (+) 528 WP_123470758.1 pilus assembly protein PilP -
  HV782_RS03085 (HV782_003085) pilQ 708671..710752 (+) 2082 WP_186746219.1 type IV pilus secretin PilQ Machinery gene
  HV782_RS03090 (HV782_003090) aroK 710757..711275 (+) 519 WP_045122260.1 shikimate kinase AroK -
  HV782_RS03095 (HV782_003095) aroB 711428..712528 (+) 1101 WP_123470762.1 3-dehydroquinate synthase -
  HV782_RS03100 (HV782_003100) - 712539..714128 (+) 1590 WP_123470763.1 AAA family ATPase -

Sequence

Protein


Download         Length: 693 a.a.        Molecular weight: 75062.45 Da        Isoelectric Point: 5.5771

>NTDB_id=578986 HV782_RS03085 WP_186746219.1 708671..710752(+) (pilQ) [Pseudomonas monsensis strain PGSB 8459]
MNRIFSTLGFSLWIALMSPMVLAANLKALDVAALPGDRVELKLSFDGPPPQPKGYTTESPARIAVDLPGVASQLASKNFD
LGSGNARTATVVEAKDRTRLIVSLTQLAPYNTRVEGNTLYVVVGQGAPVAAPRPAAAVPRATTVAAAPAKAFVAKSRAIR
GVDFQRGTAGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLQEKLRVRLDVKDFATPVQFVNAGVSGDRTVVTVEPGG
TYEYSTFQTDNKLTVSVRPMTVDDLQKRNADRNSYVGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPADEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSIQNKGNWNTSGVS
NGNSTTIGTPGSTSTNSPFVDMGTVGNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIP
YQEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFS
NTQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2082 bp        

>NTDB_id=578986 HV782_RS03085 WP_186746219.1 708671..710752(+) (pilQ) [Pseudomonas monsensis strain PGSB 8459]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGATGTCGCCGATGGTACTCGCTGCCAACCTGAA
GGCGCTCGACGTGGCGGCATTGCCGGGCGACCGCGTCGAACTGAAGTTGTCGTTCGACGGCCCGCCACCGCAGCCCAAGG
GCTACACCACCGAGTCGCCGGCGCGCATCGCTGTGGATTTGCCCGGTGTCGCCAGTCAGTTGGCGAGCAAAAATTTCGAT
CTGGGCAGTGGCAATGCGCGCACTGCCACGGTGGTCGAGGCCAAGGACCGGACGCGGCTGATCGTCAGCCTCACGCAGTT
GGCGCCCTATAACACGCGAGTGGAGGGCAATACTCTGTACGTGGTGGTCGGCCAGGGCGCGCCGGTTGCGGCCCCCCGTC
CCGCAGCCGCCGTACCCCGTGCGACGACCGTCGCTGCTGCTCCGGCCAAGGCCTTCGTGGCGAAAAGCCGAGCGATTCGC
GGTGTCGATTTCCAGCGCGGTACGGCGGGCGAGGGCAATGTGGTCATCGACCTGTCCGACCCGACCATTGCCCCGGATAT
CCAGGAGCATGACGGCAAGATCATCCTCAGCTTCGCCCGTACTCAGTTGCAGGAGAAACTGCGAGTACGGCTCGACGTCA
AGGATTTCGCCACGCCGGTGCAGTTCGTCAATGCCGGGGTGAGCGGTGATCGCACGGTGGTCACCGTCGAACCCGGCGGC
ACTTACGAGTATTCGACTTTCCAGACCGACAACAAACTGACCGTCAGCGTCCGCCCGATGACGGTCGACGATCTGCAAAA
GCGTAATGCCGACCGCAACAGCTACGTCGGCGAAAAGCTCTCGTTGAACTTCCAGGACATCGACGTGCGCTCGGTACTGC
AATTGATCGCCGACTTCACCAACCTCAATCTGGTCGCCAGCGACACGGTGCAGGGCGGTATCACCTTGCGCCTGCAGAAC
GTGCCGTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTCGATAAACGCAAGATCGGCAATGTGCTGCTGGT
GGCACCCGCTGATGAAATCGCCGCCCGTGAGCGCCAGGAACTGGAGTCGCAGAAGCAGATCGCCGAACTGGCGCCGTTGC
GCCGCGAACTGCTGCAAGTGAATTACGCCAAGGCGGCCGACATCGCCAAACTGTTCCAGTCGGTGACCAGCGCCGAAGCG
AAAGTCGATGAGCGTGGTTCGATCACGGTCGATGAGCGCACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
CGAACTGCGGCGGATCGTGGCGCAGCTGGATATCCCGGTACGCCAGGTGATGATCGAGGCGCGGATCGTCGAGGCCAACG
TCGATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGATCCAGAACAAGGGCAACTGGAACACGTCCGGGGTCAGT
AACGGCAACTCAACCACCATTGGCACGCCGGGCAGCACCAGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCGGCAA
CACGTCCGGGATCGGCATTGCGTTCATCACCGATAATGTATTGCTCGATCTTGAGCTGACAGCGATGGAAAAAACCGGCA
ACGGCGAAATTGTCTCCCAGCCGAAGGTGGTCACCTCCGACAAGGAAACCGCGAAGATCCTCAAGGGCACCGAGATTCCG
TACCAGGAAGCCAGCTCCAGCGGGGCGACGTCGGTGTCGTTCAAGGAAGCTTCGCTGTCGCTGGAGGTGACGCCGCAGAT
CACGCCCGACAACCGCATCATCATGGAAGTGAAGGTCACCAAGGACGAACCGGACTACCTGAACAAAGTGCAGGATGTAC
CGCCGATCAAGAAAAACGAGGTCAACGCCAAAGTACTGGTGAATGACGGCGAAACCATCGTGATTGGGGGCGTTTTCTCA
AATACTCAAAGCAAGGTTGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGT
GGTTTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTT
GA

Domains

Predicted by InterproScan.

Secretin and TonB N terminus short domain (STN)

(303-349)

Bacterial type II and III secretion system protein (Secretin)

(528-684)

AMIN domain (AMIN)

(37-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

71.927

100

0.743
  pilQ Acinetobacter baumannii strain A118

37.683

100

0.408
  pilQ Acinetobacter baumannii D1279779

37.683

100

0.408
  comQ Acinetobacter baylyi ADP1

40.778

100

0.408
  pilQ Legionella pneumophila strain ERS1305867

37.834

97.258

0.368
  pilQ Legionella pneumophila strain Lp02

37.834

97.258

0.368