Detailed information NTG0578965

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: HU749_RS11650
• Genome accession: NZ_CP077086
• Coordinates: 2614628..2615746 (+)
• Length: 372 a.a.
• NCBI ID: WP_079302516.1
• Uniprot ID: -
• Organism: Pseudomonas ogarae strain SWRI108
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2609628..2620746

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HU749_RS11635 (HU749_011635)	-	2610562..2611479 (+)	918	WP_186650671.1	sugar kinase	-
HU749_RS11640 (HU749_011640)	-	2611634..2611909 (-)	276	WP_003182808.1	peptidylprolyl isomerase	-
HU749_RS11645 (HU749_011645)	-	2611958..2614495 (-)	2538	WP_079302495.1	PAS domain-containing protein	-
HU749_RS11650 (HU749_011650)	pilU	2614628..2615746 (+)	1119	WP_079302516.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
HU749_RS11655 (HU749_011655)	-	2615859..2617814 (-)	1956	WP_079302496.1	acetoacetate--CoA ligase	-
HU749_RS11660 (HU749_011660)	-	2618042..2618818 (-)	777	WP_186650673.1	3-hydroxybutyrate dehydrogenase	-
HU749_RS11665 (HU749_011665)	-	2618826..2620217 (-)	1392	WP_014338695.1	GntP family permease	-

Sequence

Protein

• Length: 372 a.a.
• Molecular weight: 41371.31 Da
• Isoelectric Point: 6.3540

>NTDB_id=578965 HU749_RS11650 WP_079302516.1 2614628..2615746(+) (pilU) [Pseudomonas ogarae strain SWRI108]
MEIDPLLRILASQNGSDLYMSTGAPPCARFEGVIKPLGNEAFKVGDIARLAESLMDAEQRLEFDRELEMNLAISLAGVGR
FRVNIFKQRNDVSMVIRNVKLDIPRFEDLKLPRVLLDTIMQKQGLMLFVGATGSGKSTSLAALIDYRNRNSSGHIITIED
PVEYIHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVVLIGEIRDRETMEHALAFADTGHLVISTLHAHNANQALDRV
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTRTGQRRAAVEVMLGSPTVADLIRRNELGELKGIMEKSEESGMQTFDHAL
FNLVVEGAIDEEEALKNADSANNLRLRLKLHSESGAAAPPVDPAAGEWGLMD

Nucleotide

• Length: 1119 bp

>NTDB_id=578965 HU749_RS11650 WP_079302516.1 2614628..2615746(+) (pilU) [Pseudomonas ogarae strain SWRI108]
ATGGAAATCGATCCGTTGTTGCGAATCCTGGCGAGCCAGAATGGTTCCGACCTTTACATGTCCACGGGTGCGCCACCGTG
CGCGCGTTTCGAGGGCGTGATCAAGCCCTTGGGAAACGAGGCGTTCAAGGTCGGTGACATTGCCCGGCTCGCCGAGTCTC
TGATGGACGCCGAACAGCGCCTTGAGTTCGATCGGGAGTTGGAAATGAACCTGGCGATCTCCCTGGCCGGCGTCGGGCGG
TTCCGGGTCAATATCTTCAAGCAGCGCAATGACGTGTCCATGGTGATCCGCAACGTCAAGCTGGACATCCCGCGCTTCGA
AGACCTGAAACTGCCTCGGGTGCTGTTGGACACCATCATGCAGAAACAGGGGTTGATGCTGTTCGTCGGTGCCACCGGCT
CGGGCAAGTCGACCTCCTTGGCGGCGCTGATCGATTACCGCAATCGCAACAGCAGCGGTCACATCATCACCATCGAGGAC
CCGGTGGAGTATATCCATCGGCACAAGAAATCCATCATCAATCAACGGGAAGTCGGTGTCGACACCCGCAGTTTTCATGC
GGCGCTGAAAAACACCCTGCGCCAGGCGCCGGACGTGGTGCTGATCGGCGAAATCCGCGATCGGGAAACCATGGAGCATG
CCTTGGCGTTTGCCGACACTGGGCACTTGGTGATTTCCACCTTGCATGCCCACAACGCCAACCAGGCCCTGGACCGGGTG
ATCAATTTCTTTCCGGAGGAGCGTCGGCCGCAGTTGCTCAATGACCTGGGCAACAACCTCAAGGCGTTCGTCTCCCAGCG
CCTGGTGCGTACCCGCACTGGCCAGCGGCGGGCGGCGGTGGAGGTCATGCTGGGCTCGCCGACGGTGGCGGACCTGATCC
GGCGCAACGAGCTCGGCGAGCTCAAGGGCATCATGGAGAAGTCAGAGGAGTCGGGGATGCAAACCTTCGATCACGCGCTG
TTCAACCTGGTGGTCGAAGGCGCCATCGATGAGGAAGAAGCGCTGAAAAATGCTGACTCGGCGAACAACCTGCGGTTGCG
TTTGAAGTTGCATAGCGAGTCGGGGGCGGCGGCGCCACCGGTCGATCCGGCGGCGGGTGAGTGGGGGCTTATGGATTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (79-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	56.62	95.43	0.54
pilU	Acinetobacter baylyi ADP1	51.374	97.849	0.503
pilU	Vibrio cholerae strain A1552	52.571	94.086	0.495
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.525	98.387	0.379
pilT	Vibrio cholerae O1 biovar El Tor strain E7946	40.841	89.516	0.366
pilT	Vibrio cholerae strain A1552	40.841	89.516	0.366
pilT	Pseudomonas stutzeri DSM 10701	38.953	92.473	0.36