Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KSS92_RS02895 Genome accession   NZ_CP077081
Coordinates   661244..663322 (+) Length   692 a.a.
NCBI ID   WP_217879177.1    Uniprot ID   -
Organism   Pseudomonas atacamensis strain SWRI76     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 656244..668322
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KSS92_RS02875 (KSS92_02875) pilM 658459..659523 (+) 1065 WP_217879175.1 pilus assembly protein PilM Machinery gene
  KSS92_RS02880 (KSS92_02880) - 659523..660089 (+) 567 WP_110602598.1 PilN domain-containing protein -
  KSS92_RS02885 (KSS92_02885) pilO 660086..660709 (+) 624 WP_217879176.1 type 4a pilus biogenesis protein PilO -
  KSS92_RS02890 (KSS92_02890) - 660706..661230 (+) 525 WP_024011268.1 pilus assembly protein PilP -
  KSS92_RS02895 (KSS92_02895) pilQ 661244..663322 (+) 2079 WP_217879177.1 type IV pilus secretin PilQ Machinery gene
  KSS92_RS02900 (KSS92_02900) aroK 663327..663845 (+) 519 WP_024011270.1 shikimate kinase AroK -
  KSS92_RS02905 (KSS92_02905) aroB 663998..665098 (+) 1101 WP_217879178.1 3-dehydroquinate synthase -
  KSS92_RS02910 (KSS92_02910) - 665109..666695 (+) 1587 WP_039756683.1 AAA family ATPase -

Sequence

Protein


Download         Length: 692 a.a.        Molecular weight: 74877.15 Da        Isoelectric Point: 5.5748

>NTDB_id=578830 KSS92_RS02895 WP_217879177.1 661244..663322(+) (pilQ) [Pseudomonas atacamensis strain SWRI76]
MNRIFSTLGFSLWIALVSPMVMAASLKALDVAALPGDRVELKLSFDGPPPQPKGYTTESPARIALDLPGVTSQLASRNLD
LGSGNARTATVAEAKDRTRLIVSLTQLAPYSTRVEGNNLFVVVGQGASATAPRPAAVAPRAATAAAAPARPAAQRSRAIR
GVDFQRGTEGEGNVVIDLSDPTIAPDIQEHDGKIILSFARTQLPEKLRVRLDVKDFATPVQFVNAALTGDRTVISVEPSG
TFDYSTFQTDNKLTVSVRPMSIDDLQKRNADRQAYVGDKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGITLRLQN
VPWDQALDLVLKTKGLDKRKIGNVLLVAPANEIAARERQELESQKQIAELAPLRRELLQVNYAKAADIAKLFQSVTSAEA
KVDERGSITVDERTNNIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEANVDYDKSLGVRWGGSVQNKGNWNASGVN
GSSSTIGTPGSTGTNSPFVDMGTVNNTSGIGIAFITDNVLLDLELTAMEKTGNGEIVSQPKVVTSDKETAKILKGTEIPY
QEASSSGATSVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNKVQDVPPIKKNEVNAKVLVNDGETIVIGGVFSN
TQSKVVDKVPFLGDVPYLGRLFRRDVVSEKKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2079 bp        

>NTDB_id=578830 KSS92_RS02895 WP_217879177.1 661244..663322(+) (pilQ) [Pseudomonas atacamensis strain SWRI76]
ATGAACAGGATTTTCTCCACCCTCGGTTTTTCGCTATGGATAGCGCTGGTGTCACCGATGGTAATGGCGGCCAGTCTGAA
AGCGCTGGATGTTGCCGCGCTGCCGGGTGACCGCGTCGAACTGAAGCTGTCGTTCGACGGCCCGCCACCACAGCCCAAGG
GCTACACAACCGAGTCGCCGGCGCGCATTGCACTGGATCTGCCGGGCGTGACCAGCCAGTTGGCCAGCAGGAATCTTGAT
CTGGGCAGCGGCAACGCGCGCACGGCCACGGTGGCCGAAGCCAAGGATCGCACGCGGCTGATTGTCAGCCTGACGCAATT
GGCGCCGTACAGCACGCGGGTCGAGGGCAATAATCTGTTTGTGGTGGTCGGTCAGGGCGCTTCCGCGACTGCGCCGCGCC
CGGCTGCCGTGGCACCGCGTGCTGCCACGGCCGCTGCGGCACCTGCCAGACCAGCCGCGCAACGAAGCAGGGCGATTCGC
GGCGTCGATTTCCAGCGCGGCACCGAGGGCGAGGGCAACGTAGTCATCGACCTCTCTGATCCGACCATCGCCCCGGATAT
CCAGGAGCACGATGGCAAGATCATCCTCAGCTTCGCCCGCACGCAATTGCCGGAAAAGCTGCGCGTGCGTCTGGATGTCA
AGGACTTCGCCACGCCGGTGCAGTTCGTCAACGCAGCGCTCACCGGCGATCGCACGGTGATCAGCGTCGAGCCCAGCGGC
ACCTTCGACTATTCCACGTTCCAGACCGACAACAAGCTCACCGTCAGCGTTCGGCCGATGAGCATCGACGACCTGCAAAA
GCGCAACGCCGACCGTCAGGCCTATGTCGGCGACAAGCTCTCGCTGAATTTTCAGGACATCGACGTGCGCTCGGTGCTGC
AACTGATCGCGGACTTCACCAATCTCAATCTGGTGGCGAGCGATACGGTGCAGGGCGGTATCACTTTGCGCCTGCAGAAC
GTGCCGTGGGATCAGGCGCTGGATCTGGTGCTGAAAACCAAGGGGCTGGACAAGCGCAAGATCGGCAATGTGCTGCTGGT
CGCGCCGGCCAATGAAATTGCCGCTCGCGAGCGTCAGGAACTGGAATCGCAGAAGCAGATCGCCGAGCTGGCGCCCCTGC
GTCGCGAGCTGCTGCAAGTCAATTACGCCAAGGCGGCGGACATCGCCAAGCTGTTCCAGTCGGTGACCAGTGCCGAGGCC
AAGGTCGACGAGCGCGGTTCGATTACCGTCGATGAGCGAACCAACAACATCATTGCCTACCAGACCCAGGATCGCCTCGA
CGAACTCCGGCGGATCGTCGCGCAGCTGGATATTCCGGTGCGGCAGGTGATGATCGAGGCGCGCATCGTTGAGGCCAACG
TCGATTACGACAAGAGCCTGGGCGTGCGCTGGGGCGGTTCGGTGCAGAACAAGGGCAACTGGAACGCCTCCGGGGTCAAC
GGTTCGTCGAGCACCATCGGTACGCCGGGCAGCACCGGCACCAACTCGCCGTTCGTCGACATGGGCACGGTCAATAACAC
TTCGGGGATCGGCATCGCATTCATCACCGACAACGTGCTGCTGGATCTCGAACTGACGGCGATGGAAAAGACCGGCAACG
GTGAAATCGTCTCGCAGCCGAAAGTGGTCACCTCGGACAAGGAAACCGCGAAGATCCTCAAAGGCACCGAGATTCCCTAT
CAGGAGGCCAGCTCCAGTGGCGCGACCTCGGTGTCGTTCAAGGAGGCCTCGCTGTCGCTGGAAGTCACTCCGCAGATCAC
TCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTGAACAAAGTGCAGGATGTGCCGC
CGATCAAGAAAAACGAGGTCAATGCCAAAGTGCTGGTAAATGACGGCGAGACCATCGTAATCGGCGGTGTTTTTTCAAAT
ACTCAAAGCAAGGTCGTAGATAAGGTGCCATTTCTTGGCGATGTGCCGTATCTTGGCCGCCTTTTCCGGCGTGATGTGGT
TTCGGAGAAAAAATCCGAGCTGCTGGTATTTCTCACTCCGCGTATCATGAATAACCAGGCGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II/III secretion system short domain (Secretin_N)

(377-442)

Secretin and TonB N terminus short domain (STN)

(303-349)

AMIN domain (AMIN)

(37-122)

Bacterial type II and III secretion system protein (Secretin)

(527-683)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

72.067

100

0.746
  comQ Acinetobacter baylyi ADP1

41.643

100

0.418
  pilQ Acinetobacter baumannii strain A118

37.652

100

0.403
  pilQ Acinetobacter baumannii D1279779

37.652

100

0.403
  pilQ Legionella pneumophila strain Lp02

37.977

98.555

0.374
  pilQ Legionella pneumophila strain ERS1305867

37.962

97.832

0.371