NTDB

Overview

Name	clpP	Type	Regulator
Locus tag	KQ224_RS10290	Genome accession	NZ_CP076721
Coordinates	1989776..1990366 (+)	Length	196 a.a.
NCBI ID	WP_171989735.1	Uniprot ID	-
Organism	Streptococcus parasuis strain H35
Function	degradation of ComX (predicted from homology) Competence regulation

Genomic Context

Location: 1984776..1995366

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
KQ224_RS10270 (KQ224_10270)	-	1984909..1985739 (+)	831	WP_171989738.1	carbohydrate ABC transporter permease	-
KQ224_RS10275 (KQ224_10275)	gtfA	1985808..1987256 (+)	1449	WP_216806595.1	sucrose phosphorylase	-
KQ224_RS10280 (KQ224_10280)	-	1987328..1988944 (+)	1617	WP_216806596.1	alpha-glucosidase	-
KQ224_RS10285 (KQ224_10285)	upp	1989024..1989653 (+)	630	WP_024391947.1	uracil phosphoribosyltransferase	-
KQ224_RS10290 (KQ224_10290)	clpP	1989776..1990366 (+)	591	WP_171989735.1	ATP-dependent Clp protease proteolytic subunit	Regulator
KQ224_RS10295 (KQ224_10295)	-	1990483..1990770 (+)	288	WP_174845760.1	DUF2129 domain-containing protein	-
KQ224_RS10300 (KQ224_10300)	-	1990935..1992104 (+)	1170	WP_216806597.1	ABC transporter substrate-binding protein	-
KQ224_RS10305 (KQ224_10305)	-	1992385..1993272 (+)	888	WP_216806598.1	branched-chain amino acid ABC transporter permease	-
KQ224_RS10310 (KQ224_10310)	-	1993275..1994222 (+)	948	WP_171989731.1	branched-chain amino acid ABC transporter permease	-
KQ224_RS10315 (KQ224_10315)	-	1994222..1994986 (+)	765	WP_171989730.1	ABC transporter ATP-binding protein	-

Sequence

Protein

Download Length: 196 a.a. Molecular weight: 21588.79 Da Isoelectric Point: 5.7110

                                >NTDB_id=577609 KQ224_RS10290 WP_171989735.1 1989776..1990366(+) (clpP) [Streptococcus parasuis strain H35]

MIPVVIEQTSRGERSYDIYSRLLKDRIIMLTGQVEDNMANSIIAQLLFLDAQDPTKDIYLYVNTPGGSVSAGLAIVDTMN

FIKADVQTIVMGTAASMGTIIASSGTKGKRFMLPNAEYLIHQPMGGTGGGTQQTDMAIAAEHLLKTRNKLEKILADNSGK

TVKQIHKDAERDYWMSAEETLAYGFIDQIMYDTKTK

Nucleotide

Download Length: 591 bp

                                >NTDB_id=577609 KQ224_RS10290 WP_171989735.1 1989776..1990366(+) (clpP) [Streptococcus parasuis strain H35]

ATGATTCCAGTAGTTATTGAACAAACTAGTCGCGGTGAGCGCTCGTATGATATTTATTCACGTTTGCTGAAAGACCGCAT

CATTATGTTGACAGGTCAGGTTGAGGACAATATGGCCAATTCGATTATTGCCCAATTGCTATTCCTAGATGCACAAGATC

CAACAAAAGATATTTATCTCTATGTAAATACACCTGGGGGTTCTGTTTCTGCAGGTCTTGCCATCGTGGATACAATGAAC

TTCATTAAAGCAGACGTACAGACAATTGTAATGGGTACTGCAGCAAGTATGGGAACAATCATTGCTTCAAGTGGTACAAA

AGGCAAACGTTTCATGCTTCCTAATGCAGAATACCTGATTCACCAACCAATGGGAGGCACTGGTGGTGGCACTCAGCAAA

CTGACATGGCAATTGCAGCAGAACACCTCTTAAAAACTCGTAACAAGTTAGAAAAAATCTTGGCGGACAATTCTGGTAAG

ACAGTCAAACAAATCCATAAGGATGCAGAACGTGACTATTGGATGTCTGCTGAAGAAACCTTGGCATACGGCTTTATCGA

CCAAATTATGTACGATACAAAGACTAAGTAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(11-190)

Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.

3D structure

Source	ID	Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.

Visualization of predicted probability:

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	H_a-value
clpP	Streptococcus pyogenes MGAS315	91.327	100	0.913
clpP	Streptococcus pyogenes JRS4	91.327	100	0.913
clpP	Streptococcus mutans UA159	89.286	100	0.893
clpP	Streptococcus thermophilus LMD-9	87.755	100	0.878
clpP	Streptococcus thermophilus LMG 18311	87.755	100	0.878
clpP	Streptococcus pneumoniae Rx1	89.474	96.939	0.867
clpP	Streptococcus pneumoniae D39	89.474	96.939	0.867
clpP	Streptococcus pneumoniae R6	89.474	96.939	0.867
clpP	Streptococcus pneumoniae TIGR4	89.474	96.939	0.867
clpP	Lactococcus lactis subsp. lactis strain DGCC12653	84.184	100	0.842
clpP	Lactococcus lactis subsp. cremoris KW2	83.673	100	0.837
clpP	Bacillus subtilis subsp. subtilis str. 168	57.653	100	0.577
clpP	Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819	58.421	96.939	0.566

Detailed information NTG0577609