Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   KQP88_RS01895 Genome accession   NZ_CP076668
Coordinates   409707..411806 (+) Length   699 a.a.
NCBI ID   WP_200993959.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 404707..416806
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS01875 (KQP88_01875) pilM 406879..407943 (+) 1065 WP_025258132.1 pilus assembly protein PilM Machinery gene
  KQP88_RS01880 (KQP88_01880) - 407943..408515 (+) 573 WP_200993960.1 PilN domain-containing protein -
  KQP88_RS01885 (KQP88_01885) pilO 408512..409135 (+) 624 WP_198724138.1 type 4a pilus biogenesis protein PilO -
  KQP88_RS01890 (KQP88_01890) - 409132..409659 (+) 528 WP_025258135.1 pilus assembly protein PilP -
  KQP88_RS01895 (KQP88_01895) pilQ 409707..411806 (+) 2100 WP_200993959.1 type IV pilus secretin PilQ Machinery gene
  KQP88_RS01900 (KQP88_01900) aroK 411811..412329 (+) 519 WP_025258137.1 shikimate kinase AroK -
  KQP88_RS01905 (KQP88_01905) aroB 412445..413548 (+) 1104 WP_200993958.1 3-dehydroquinate synthase -
  KQP88_RS01910 (KQP88_01910) - 413559..415184 (+) 1626 WP_200993957.1 AAA family ATPase -

Sequence

Protein


Download         Length: 699 a.a.        Molecular weight: 75068.33 Da        Isoelectric Point: 4.8779

>NTDB_id=577138 KQP88_RS01895 WP_200993959.1 409707..411806(+) (pilQ) [Pseudomonas lijiangensis strain LJ2]
MIRILSIIGVSLGIAMLSPVLQAANLKTLDVAALPGDRIELKLSFDSPVPAPRGYTTEQPARIALDLPGVTSQLATKSRD
LGAGNARSVVVVQAQDRTRVIINMTTLSPYSSRVEGNNLFVVVGQGAAAAQSSQPSTAMGAPRVAVPTPAPAAARPYVPA
GVKAIKNIDFQRGELGEGNVVIDLSSPGISPDIQEQGGKIRVDFAKTQLPEPLRVRLDVKDFATPVQFVSATTSGDKASI
SIEPSGAFDYSAYQTENKLTISVRPLTNEDLDRRAADKPVYTGEKLSLNFQDIDVRSVLQLIADFTNLNLVASDTVQGGI
TLRLQNVPWDQALDLVLKTKGLDKRKVGSVLLVAPADEIAARERQELESLKQISELAPLRRELLQVNYAKAADIAKLFQS
VTSVESKADERGSITVDERTNNIIAYQTQDRLDELRRIVSQLDIPVRQVMIEARIVEANVDYDKALGVRWGGTKVGSGNW
NTYGLDDNGDEAGNTGSDLGANTPFVDLGAGSATSGIGIAFVTNNTLLDLELSAMEKTGNGEIVSQPKVVTSDKETAKIL
KGTEIPYQESSSSGATTVSFKEASLSLEVTPQITPDNRIIMEVKVTKDEPDYLNAVLGVPPIKKNEVNAKVLVSDGETIV
IGGVFSNTQSKVVEKVPFLGDVPYLGRLFRRDTVSEAKSELLVFLTPRIMNNQAIAVSR

Nucleotide


Download         Length: 2100 bp        

>NTDB_id=577138 KQP88_RS01895 WP_200993959.1 409707..411806(+) (pilQ) [Pseudomonas lijiangensis strain LJ2]
ATGATCAGGATTCTCTCGATTATCGGCGTTTCGCTAGGGATAGCGATGCTTTCGCCGGTTCTCCAGGCAGCCAATCTCAA
AACGCTGGATGTCGCAGCCTTGCCAGGTGACCGGATCGAACTGAAGCTTTCCTTCGATTCTCCGGTTCCTGCGCCGCGCG
GCTATACCACCGAACAGCCGGCGCGCATCGCGCTGGACCTGCCGGGTGTGACCAGCCAGCTGGCAACCAAGAGTCGTGAT
CTGGGTGCGGGCAATGCGCGCAGTGTCGTGGTGGTTCAGGCCCAGGACCGCACGCGGGTCATCATCAACATGACGACGCT
GTCTCCCTACAGCTCCCGTGTCGAAGGCAATAACCTGTTCGTGGTTGTCGGCCAGGGCGCCGCCGCTGCGCAATCCTCCC
AGCCGAGCACGGCCATGGGAGCGCCACGAGTCGCCGTCCCGACGCCAGCTCCGGCAGCAGCGCGGCCTTATGTGCCGGCT
GGTGTGAAAGCCATCAAGAATATCGACTTCCAGCGCGGCGAGCTGGGTGAGGGCAATGTGGTCATCGACCTGAGCAGTCC
TGGAATCTCTCCGGACATTCAGGAGCAGGGCGGCAAGATTCGTGTCGACTTTGCCAAGACCCAGTTGCCCGAGCCGCTGC
GGGTCAGGCTGGACGTCAAGGATTTCGCCACGCCTGTGCAGTTCGTGAGCGCCACGACTTCCGGCGACAAGGCGAGCATC
AGCATCGAGCCTTCGGGCGCTTTCGACTACTCGGCCTACCAGACCGAAAACAAGCTGACCATCAGCGTGCGTCCCCTGAC
CAACGAAGACCTGGACCGTCGTGCTGCCGACAAACCGGTCTACACCGGTGAAAAACTGTCGCTGAATTTCCAGGACATCG
ATGTGCGCTCGGTGCTGCAACTGATTGCCGATTTCACCAACCTGAACCTGGTGGCCAGTGACACGGTTCAGGGCGGTATT
ACCCTGCGCCTGCAGAATGTGCCGTGGGATCAGGCGCTGGATCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGT
GGGCAGTGTCCTGCTGGTCGCACCGGCTGATGAAATTGCTGCCCGTGAGCGTCAGGAGCTGGAATCCCTCAAGCAGATTT
CCGAACTGGCGCCGTTGCGTCGCGAGCTTCTGCAGGTCAACTACGCCAAGGCAGCCGACATCGCCAAGCTGTTCCAGTCG
GTGACCAGCGTCGAGTCGAAAGCCGACGAGCGTGGTTCGATCACCGTGGATGAGCGTACCAACAATATCATTGCCTACCA
GACCCAGGACCGCCTCGACGAACTGCGCCGCATCGTGTCTCAACTGGATATTCCGGTGCGTCAGGTGATGATCGAGGCGC
GCATCGTCGAAGCCAACGTCGATTACGACAAGGCGCTGGGTGTGCGCTGGGGTGGGACCAAGGTCGGCAGTGGCAACTGG
AACACCTACGGTCTTGACGATAATGGTGACGAGGCGGGCAATACCGGCAGTGACCTGGGTGCCAATACACCGTTTGTCGA
CCTGGGTGCCGGTAGTGCGACTTCCGGGATTGGTATCGCTTTCGTCACCAATAACACGTTGCTCGATCTTGAGCTGAGCG
CGATGGAGAAGACCGGCAACGGTGAAATCGTTTCCCAGCCCAAGGTGGTCACTTCCGACAAGGAAACCGCCAAGATCCTC
AAAGGTACGGAAATCCCTTATCAGGAATCCAGCTCCAGCGGCGCCACAACCGTGAGTTTCAAGGAAGCGTCCCTGTCGCT
GGAAGTGACGCCGCAGATCACGCCGGACAACCGCATCATCATGGAGGTCAAGGTCACCAAGGATGAGCCGGACTACCTCA
ATGCCGTGCTGGGTGTACCTCCGATCAAGAAAAACGAGGTCAATGCCAAGGTGCTGGTTTCCGATGGCGAGACGATCGTG
ATCGGTGGCGTGTTCTCCAACACACAAAGTAAAGTTGTAGAGAAAGTGCCATTTCTTGGCGATGTACCGTATCTTGGCCG
CCTTTTCCGTCGAGATACGGTTTCAGAAGCGAAATCCGAGCTGTTGGTATTTCTGACTCCGCGTATCATGAACAACCAGG
CGATTGCTGTGAGTCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(534-690)

Secretin and TonB N terminus short domain (STN)

(309-355)

Bacterial type II/III secretion system short domain (Secretin_N)

(383-448)

AMIN domain (AMIN)

(38-121)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

74.616

100

0.765
  comQ Acinetobacter baylyi ADP1

42.286

100

0.423
  pilQ Acinetobacter baumannii strain A118

39.024

100

0.412
  pilQ Acinetobacter baumannii D1279779

39.024

100

0.412
  pilQ Legionella pneumophila strain ERS1305867

38.767

97.425

0.378
  pilQ Legionella pneumophila strain Lp02

38.767

97.425

0.378