Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   KQP88_RS01875 Genome accession   NZ_CP076668
Coordinates   406879..407943 (+) Length   354 a.a.
NCBI ID   WP_025258132.1    Uniprot ID   -
Organism   Pseudomonas lijiangensis strain LJ2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 401879..412943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KQP88_RS01860 (KQP88_01860) - 401993..402847 (+) 855 WP_216704696.1 sulfurtransferase -
  KQP88_RS01865 (KQP88_01865) - 403062..404108 (-) 1047 WP_216704697.1 hydrolase -
  KQP88_RS01870 (KQP88_01870) - 404229..406667 (-) 2439 WP_407681823.1 penicillin-binding protein 1A -
  KQP88_RS01875 (KQP88_01875) pilM 406879..407943 (+) 1065 WP_025258132.1 pilus assembly protein PilM Machinery gene
  KQP88_RS01880 (KQP88_01880) - 407943..408515 (+) 573 WP_200993960.1 PilN domain-containing protein -
  KQP88_RS01885 (KQP88_01885) pilO 408512..409135 (+) 624 WP_198724138.1 type 4a pilus biogenesis protein PilO -
  KQP88_RS01890 (KQP88_01890) - 409132..409659 (+) 528 WP_025258135.1 pilus assembly protein PilP -
  KQP88_RS01895 (KQP88_01895) pilQ 409707..411806 (+) 2100 WP_200993959.1 type IV pilus secretin PilQ Machinery gene
  KQP88_RS01900 (KQP88_01900) aroK 411811..412329 (+) 519 WP_025258137.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 354 a.a.        Molecular weight: 38127.62 Da        Isoelectric Point: 4.6928

>NTDB_id=577137 KQP88_RS01875 WP_025258132.1 406879..407943(+) (pilM) [Pseudomonas lijiangensis strain LJ2]
MFELFGKKANTLLGIDISSTSVKLLELSRSGTRYKVESYAVEPLPANAVVEKNIAELEGVGQALSRVLVKAKTNAKIVAV
AVAGSAVITKTIEMDAGLSDDDMENQLKLEADQYIPYPLEEVAIDFEVQGYSARNPERVEVLLAACRKENVEVREAALAL
AGLTARVVDVEAYALERSFGLLSAQLGNDHDQLTVAVVDIGATMTTLSVLHHGRIIYTREQLFGGRQLTEEIQRRYGLSM
EEAGLAKKQGGLSDDYVSEVLNPFKDALVQQVSRSLQFFFAAGQYNTVDYIMLAGGTASIPGLEHLIQKRLGTPTLVANP
FADMALSSKVNAGALASDAPALMIACGLALRSFD

Nucleotide


Download         Length: 1065 bp        

>NTDB_id=577137 KQP88_RS01875 WP_025258132.1 406879..407943(+) (pilM) [Pseudomonas lijiangensis strain LJ2]
GTGTTCGAACTCTTCGGTAAGAAGGCCAACACCCTTCTAGGGATCGATATTAGCTCTACCTCGGTAAAACTCCTTGAGTT
GAGTCGTTCCGGCACTCGTTACAAGGTCGAGTCTTATGCGGTCGAACCGCTGCCGGCCAATGCCGTCGTCGAAAAGAATA
TTGCCGAACTCGAAGGGGTCGGCCAGGCGTTGTCGCGGGTGCTGGTCAAGGCCAAGACGAACGCCAAAATAGTGGCGGTC
GCCGTGGCGGGCTCGGCGGTCATCACCAAGACCATCGAGATGGACGCCGGTCTGTCCGACGACGATATGGAAAACCAGCT
CAAGCTTGAAGCTGACCAGTACATTCCCTATCCCCTCGAAGAAGTCGCCATCGATTTTGAAGTCCAGGGCTATTCGGCGC
GCAATCCCGAGCGCGTCGAAGTGCTGCTGGCCGCCTGCCGCAAGGAAAACGTGGAAGTGCGTGAGGCCGCATTGGCGCTG
GCCGGGCTGACGGCCCGTGTCGTCGATGTGGAGGCCTACGCGCTGGAGCGTTCTTTCGGCCTGCTGTCTGCCCAGTTGGG
CAATGATCACGATCAACTGACCGTTGCCGTGGTGGACATCGGCGCAACCATGACCACCCTGAGCGTGCTGCATCACGGGC
GCATCATCTATACACGTGAGCAATTGTTCGGTGGGCGCCAGCTGACCGAGGAAATCCAGCGTCGCTATGGCCTGTCCATG
GAAGAAGCGGGGCTTGCGAAGAAGCAGGGCGGGCTGTCCGACGATTACGTCAGCGAAGTGTTGAACCCCTTCAAGGATGC
CCTGGTTCAGCAAGTGTCCCGCTCGCTGCAGTTTTTCTTTGCCGCCGGGCAGTACAACACCGTCGACTACATCATGCTGG
CGGGCGGTACGGCTTCCATTCCAGGACTTGAGCACTTGATCCAGAAACGTCTTGGTACGCCAACCCTGGTCGCCAACCCT
TTTGCCGACATGGCCCTGAGTTCCAAGGTCAACGCCGGTGCATTGGCCAGTGATGCTCCCGCATTGATGATCGCCTGCGG
TCTTGCCTTGAGGAGCTTCGACTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(14-353)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Acinetobacter baumannii D1279779

55.367

100

0.554
  comM Acinetobacter nosocomialis M2

55.367

100

0.554
  comM Acinetobacter baylyi ADP1

53.107

100

0.531
  pilM Legionella pneumophila strain ERS1305867

46.61

100

0.466