Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpP   Type   Regulator
Locus tag   KPG64_RS14235 Genome accession   NZ_CP076539
Coordinates   2767536..2768117 (+) Length   193 a.a.
NCBI ID   WP_042598103.1    Uniprot ID   A0A9X6Z6G8
Organism   Bacillus thuringiensis strain GR007     
Function   degradation of ComK; degradation of DegU (predicted from homology)   
Competence regulation

Genomic Context

Location: 2762536..2773117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  KPG64_RS14200 (KPG64_14200) - 2763159..2763623 (-) 465 WP_000024965.1 hypothetical protein -
  KPG64_RS14205 (KPG64_14205) - 2764096..2764314 (+) 219 WP_000337734.1 hypothetical protein -
  KPG64_RS14210 (KPG64_14210) - 2764322..2764924 (+) 603 WP_000342606.1 hypothetical protein -
  KPG64_RS14215 (KPG64_14215) - 2765149..2765583 (-) 435 WP_001190875.1 GNAT family N-acetyltransferase -
  KPG64_RS14220 (KPG64_14220) rpiA 2765698..2766360 (-) 663 WP_016077570.1 ribose 5-phosphate isomerase A -
  KPG64_RS14225 (KPG64_14225) - 2766365..2766685 (-) 321 WP_001125391.1 2Fe-2S iron-sulfur cluster-binding protein -
  KPG64_RS14230 (KPG64_14230) - 2766828..2767514 (+) 687 WP_000337517.1 RNA polymerase subunit sigma-70 -
  KPG64_RS14235 (KPG64_14235) clpP 2767536..2768117 (+) 582 WP_042598103.1 ATP-dependent Clp endopeptidase proteolytic subunit ClpP Regulator
  KPG64_RS14240 (KPG64_14240) - 2768161..2769018 (-) 858 WP_001227626.1 glycine betaine ABC transporter substrate-binding protein -
  KPG64_RS14245 (KPG64_14245) - 2769190..2770395 (+) 1206 WP_000370608.1 glycine betaine/L-proline ABC transporter ATP-binding protein -
  KPG64_RS14250 (KPG64_14250) - 2770388..2771224 (+) 837 WP_001059837.1 proline/glycine betaine ABC transporter permease -
  KPG64_RS14255 (KPG64_14255) - 2771278..2771514 (-) 237 WP_000553346.1 hypothetical protein -
  KPG64_RS14260 (KPG64_14260) - 2771732..2771899 (+) 168 WP_000508401.1 hypothetical protein -
  KPG64_RS14265 (KPG64_14265) - 2771990..2772490 (+) 501 WP_003278553.1 HIT family protein -

Sequence

Protein


Download         Length: 193 a.a.        Molecular weight: 21296.51 Da        Isoelectric Point: 4.9174

>NTDB_id=576337 KPG64_RS14235 WP_042598103.1 2767536..2768117(+) (clpP) [Bacillus thuringiensis strain GR007]
MNAIPYVVEQTKLGERSYDIYSRLLKDRIIIIGSEINDQVASSVVAQLLFLEAEDAEKDIYLYINSPGGSTTAGFAILDT
MNLIKPDVQTLCMGFAASFGALLLLSGAKGKRFALPNSEIMIHQPLGGAQGQATEIEITAKRILKLKHDINKMIAEKTGQ
PIERVAHDTERDYFMTTEEAKEYGIVDDVVTKK

Nucleotide


Download         Length: 582 bp        

>NTDB_id=576337 KPG64_RS14235 WP_042598103.1 2767536..2768117(+) (clpP) [Bacillus thuringiensis strain GR007]
ATGAATGCAATTCCATATGTAGTAGAACAAACAAAATTAGGAGAACGTTCCTATGATATATATTCAAGGCTATTAAAAGA
CCGCATTATTATTATCGGTTCAGAAATTAATGATCAAGTAGCGAGTAGTGTCGTAGCTCAACTATTATTTTTAGAAGCAG
AAGATGCAGAAAAAGATATATATTTATATATCAATAGCCCAGGAGGTTCAACGACAGCAGGTTTTGCAATATTAGATACG
ATGAATTTAATTAAACCAGATGTACAAACGCTATGCATGGGCTTTGCGGCATCATTTGGTGCATTGTTATTATTATCAGG
AGCAAAAGGAAAACGGTTTGCGCTCCCTAACAGTGAAATTATGATTCATCAGCCGCTTGGTGGTGCACAGGGGCAAGCAA
CAGAAATTGAAATAACAGCAAAAAGGATATTAAAGTTAAAGCATGATATTAATAAAATGATTGCAGAAAAAACAGGCCAA
CCGATTGAAAGAGTAGCGCATGATACAGAAAGAGATTATTTTATGACCACAGAAGAAGCTAAGGAATATGGAATTGTAGA
TGATGTTGTTACGAAAAAATAA

Domains

Predicted by InterproScan.

Clp protease (CLP_protease)

(14-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpP Bacillus subtilis subsp. subtilis str. 168

68.586

98.964

0.679
  clpP Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

67.725

97.927

0.663
  clpP Streptococcus thermophilus LMD-9

55.729

99.482

0.554
  clpP Streptococcus pneumoniae Rx1

55.729

99.482

0.554
  clpP Streptococcus pneumoniae D39

55.729

99.482

0.554
  clpP Streptococcus pneumoniae TIGR4

55.729

99.482

0.554
  clpP Streptococcus pneumoniae R6

55.729

99.482

0.554
  clpP Streptococcus thermophilus LMG 18311

55.729

99.482

0.554
  clpP Streptococcus pyogenes JRS4

55.556

97.927

0.544
  clpP Streptococcus pyogenes MGAS315

55.556

97.927

0.544
  clpP Streptococcus mutans UA159

53.968

97.927

0.528
  clpP Lactococcus lactis subsp. cremoris KW2

52.91

97.927

0.518
  clpP Lactococcus lactis subsp. lactis strain DGCC12653

50.794

97.927

0.497