Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilQ   Type   Machinery gene
Locus tag   H681_RS22715 Genome accession   NC_020829
Coordinates   5071339..5073477 (-) Length   712 a.a.
NCBI ID   WP_015479239.1    Uniprot ID   -
Organism   Pseudomonas sp. ATCC 13867     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5066339..5078477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  H681_RS22700 (H681_22600) - 5067993..5069648 (-) 1656 WP_015479236.1 AAA family ATPase -
  H681_RS22705 (H681_22605) aroB 5069655..5070761 (-) 1107 WP_015479237.1 3-dehydroquinate synthase -
  H681_RS22710 (H681_22610) aroK 5070812..5071330 (-) 519 WP_080636280.1 shikimate kinase AroK -
  H681_RS22715 (H681_22615) pilQ 5071339..5073477 (-) 2139 WP_015479239.1 type IV pilus secretin PilQ Machinery gene
  H681_RS22720 (H681_22620) pilP 5073531..5074055 (-) 525 WP_015479240.1 type 4a pilus biogenesis lipoprotein PilP -
  H681_RS22725 (H681_22625) pilO 5074052..5074705 (-) 654 WP_015479241.1 type 4a pilus biogenesis protein PilO -
  H681_RS22730 (H681_22630) pilN 5074702..5075295 (-) 594 WP_015479242.1 type 4a pilus biogenesis protein PilN -
  H681_RS22735 (H681_22635) pilM 5075295..5076359 (-) 1065 WP_015479243.1 pilus assembly protein PilM Machinery gene

Sequence

Protein


Download         Length: 712 a.a.        Molecular weight: 76661.12 Da        Isoelectric Point: 5.1213

>NTDB_id=57464 H681_RS22715 WP_015479239.1 5071339..5073477(-) (pilQ) [Pseudomonas sp. ATCC 13867]
MNRTLSRLSISLLAAVFAPALLAANLQSVDVAALPGDRVELKLGFDGPVAAPRGYTIEQPARIALDLPGVQNKLGSKNRE
LGVGNARSLTVVEAKDRTRLIVNLSTLVPYTTRSDGSNLYVVVGGSGASSTVASAAPVSSAIAKPAQPKPYIPAGKAIRN
IDFQRGEQGEGNVVIDLSDPTLSPDIQEQGGKIRLDFPRTQLPDNLRVRLDVKDFATPVQFVNASTSGDKASISIEPTGL
YDYLVYQTDNRMTVSIKPMTMDDAEKRKKDTFAYTGEKLSLNFQDIDVRSVLQLIADFTDLNLVASDTVQGNITLRLQNV
PWDQALDLVLKTKGLDKRKVGNVLLVAPAEEIAARERQELEAQKQISELAPLRRELIQVNYAKASDIAKLFQSVTGVGGA
PGAPAAGADTRGSITVDDRTNAIIAYQTQDRLDELRRIVAQLDIPVRQVMIEARIVEAAVDYSKALGVRWGGAFRGGNWD
FYGKDGARGISDDGVVGFPTTDTIGNFKLDEGSTPVPFVDMGVAESTSGIGIGFLSDHAMLDLQLSAMEKSGNGEVVSQP
KVVTSDKETAKILKGSEIPYQEASSSGATSVSFKEAALALEVTPQITPDNRILMEVKVNKDEPDYANRLNGVPPIKKNEV
NAKVLVNDGETIVIGGVFSNTQTKAVDKVPFLGDVPFIGRLFRRDSITDSKNELLVFITPRIMNNQAFAVGR

Nucleotide


Download         Length: 2139 bp        

>NTDB_id=57464 H681_RS22715 WP_015479239.1 5071339..5073477(-) (pilQ) [Pseudomonas sp. ATCC 13867]
ATGAACAGAACACTTTCCCGCCTGAGCATCTCCTTGCTCGCGGCTGTCTTTGCGCCGGCTTTGCTGGCCGCCAACCTGCA
GAGCGTCGATGTGGCGGCGCTGCCGGGTGATCGGGTCGAGCTGAAGCTGGGCTTTGACGGGCCGGTGGCCGCTCCGCGCG
GCTACACCATCGAGCAGCCGGCGCGCATCGCGCTGGACCTGCCGGGCGTGCAGAACAAGCTGGGCAGCAAGAACCGGGAG
CTGGGTGTGGGCAATGCCCGCAGCCTGACGGTGGTCGAGGCCAAGGATCGCACCCGCCTGATCGTCAACCTGAGCACGCT
GGTGCCTTACACCACCCGGTCGGATGGTTCGAACCTGTACGTCGTGGTGGGCGGAAGCGGTGCTTCCAGCACGGTCGCCT
CGGCGGCGCCGGTATCTTCGGCGATCGCCAAGCCGGCCCAGCCCAAGCCGTATATTCCCGCAGGCAAGGCGATTCGCAAT
ATCGACTTCCAGCGCGGCGAGCAGGGTGAAGGCAATGTCGTGATCGACCTGTCCGATCCGACGCTCAGCCCGGACATCCA
GGAGCAGGGTGGCAAGATTCGCCTGGACTTCCCGCGCACCCAGTTGCCGGACAATCTGCGGGTACGCCTGGATGTGAAGG
ACTTCGCCACGCCGGTGCAGTTCGTCAATGCTTCGACTTCGGGTGACAAGGCCAGTATTTCCATCGAGCCGACCGGCCTG
TACGACTACCTGGTCTATCAGACCGACAATCGGATGACCGTCAGCATCAAGCCGATGACGATGGACGATGCCGAGAAGCG
CAAGAAGGATACCTTCGCTTATACCGGCGAGAAGCTGTCGCTGAACTTCCAGGACATCGACGTGCGCTCGGTGCTGCAAC
TGATCGCTGACTTCACCGACCTGAACCTGGTCGCTTCCGATACGGTTCAGGGCAACATCACCCTGCGCTTGCAGAACGTG
CCCTGGGATCAGGCGCTGGACCTGGTGCTCAAGACCAAGGGCCTGGACAAGCGCAAGGTGGGCAACGTCCTGCTGGTTGC
CCCGGCGGAGGAGATCGCGGCGCGCGAGCGCCAGGAGCTCGAAGCCCAGAAGCAGATTTCCGAGCTGGCTCCCCTGCGGC
GCGAGCTGATCCAGGTGAACTACGCCAAGGCGTCCGACATCGCCAAGCTGTTCCAGTCGGTAACGGGTGTGGGCGGCGCT
CCGGGCGCTCCGGCGGCGGGTGCGGATACTCGTGGCTCGATCACCGTCGACGATCGGACCAACGCGATCATCGCCTACCA
GACCCAGGATCGCCTGGATGAGCTGCGTCGTATCGTTGCCCAGCTGGATATCCCGGTGCGCCAGGTGATGATCGAGGCGC
GTATCGTTGAAGCCGCCGTGGACTACAGCAAGGCCTTGGGCGTTCGCTGGGGTGGCGCGTTCAGAGGGGGGAACTGGGAT
TTCTACGGCAAGGACGGTGCGCGTGGAATCTCCGATGATGGGGTAGTTGGTTTCCCGACGACTGATACGATTGGAAACTT
CAAGCTGGACGAAGGCAGCACTCCTGTTCCATTCGTCGATATGGGGGTTGCCGAGAGCACCTCGGGTATCGGTATCGGCT
TCCTGAGCGATCACGCCATGCTTGACCTGCAGCTTTCCGCTATGGAGAAGAGCGGCAACGGTGAAGTGGTTTCCCAGCCG
AAGGTCGTCACCTCCGACAAGGAAACCGCGAAGATCCTCAAGGGCTCGGAGATTCCCTACCAGGAAGCCAGTTCCAGCGG
CGCGACCTCGGTGTCCTTCAAGGAAGCTGCACTGGCGCTGGAGGTGACGCCGCAGATCACTCCGGACAATCGCATCCTCA
TGGAAGTGAAGGTCAACAAGGACGAGCCGGACTACGCCAACCGGCTGAACGGTGTGCCGCCGATCAAGAAGAACGAAGTC
AATGCCAAGGTGCTGGTCAACGATGGCGAAACCATCGTGATCGGTGGTGTGTTCTCCAACACCCAGACCAAGGCTGTGGA
CAAGGTTCCGTTCCTGGGTGACGTGCCCTTCATTGGCCGGCTGTTCCGCCGCGACTCGATAACCGACAGCAAGAACGAGC
TCTTGGTTTTCATTACTCCGCGGATTATGAATAATCAGGCCTTTGCAGTCGGCCGTTGA

Domains

Predicted by InterproScan.

Bacterial type II and III secretion system protein (Secretin)

(547-703)

AMIN domain (AMIN)

(40-121)

Bacterial type II/III secretion system short domain (Secretin_N)

(376-448)

Secretin and TonB N terminus short domain (STN)

(302-348)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilQ Pseudomonas aeruginosa PAK

78.788

100

0.803
  comQ Acinetobacter baylyi ADP1

41.655

100

0.424
  pilQ Acinetobacter baumannii D1279779

39.329

100

0.412
  pilQ Acinetobacter baumannii strain A118

39.329

100

0.412
  pilQ Legionella pneumophila strain Lp02

39.017

97.191

0.379
  pilQ Legionella pneumophila strain ERS1305867

39.017

97.191

0.379

Multiple sequence alignment