Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CTB89_RS01600 Genome accession   NZ_AP017891
Coordinates   358524..359369 (+) Length   281 a.a.
NCBI ID   WP_042908629.1    Uniprot ID   -
Organism   Staphylococcus aureus strain GN3     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 353524..364369
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CTB89_RS01580 - 353792..355633 (-) 1842 WP_020976951.1 bifunctional homocysteine S-methyltransferase/methylenetetrahydrofolate reductase -
  CTB89_RS01585 metC 355602..356762 (-) 1161 WP_000175849.1 cystathionine beta-lyase MetC -
  CTB89_RS01590 - 356759..357862 (-) 1104 WP_000655692.1 PLP-dependent transferase -
  CTB89_RS01600 spo0J 358524..359369 (+) 846 WP_042908629.1 ParB/RepB/Spo0J family partition protein Regulator
  CTB89_RS01605 - 359523..360404 (+) 882 WP_020976953.1 mechanosensitive ion channel family protein -
  CTB89_RS01610 - 360434..360637 (+) 204 WP_000157346.1 DUF951 domain-containing protein -
  CTB89_RS01615 ychF 360649..361746 (+) 1098 WP_020976954.1 redox-regulated ATPase YchF -
  CTB89_RS01620 - 361832..362023 (-) 192 WP_001052483.1 hypothetical protein -
  CTB89_RS01630 rpsF 362267..362563 (+) 297 WP_001261460.1 30S ribosomal protein S6 -
  CTB89_RS01635 ssbA 362584..363087 (+) 504 WP_000934799.1 single-stranded DNA-binding protein Machinery gene
  CTB89_RS01640 rpsR 363139..363381 (+) 243 WP_000897044.1 30S ribosomal protein S18 -

Sequence

Protein


Download         Length: 281 a.a.        Molecular weight: 32783.79 Da        Isoelectric Point: 10.0000

>NTDB_id=57465 CTB89_RS01600 WP_042908629.1 358524..359369(+) (spo0J) [Staphylococcus aureus strain GN3]
MSELSKSEDQRITKTKDEQIKQIDISDIKPNPYQPRKTFDENHLNDLADSIKQYGILQPIVLRKTVQGYYIVVGERRFRA
SKIAGLKYVSAIIKDLTDEDMMELAVIENLQREDLNAIEEAESYQRLMTDLKITQQEVAKRLSKSRPYIANMLRLLHLPK
KVADMVKDGRLTSAHGRTLLAIKDEQQMLRLAKRVVKEKWSVRYLENHVNELKNVSSKSETDKVDITKPKFIKQQERQLR
EQYGAKVDISIKKSVGKISFEFESQDDFVRIIEQLNRKYGK

Nucleotide


Download         Length: 846 bp        

>NTDB_id=57465 CTB89_RS01600 WP_042908629.1 358524..359369(+) (spo0J) [Staphylococcus aureus strain GN3]
GTGAGTGAATTGTCAAAAAGTGAAGATCAACGTATTACTAAAACAAAAGATGAACAAATTAAGCAAATAGATATATCGGA
TATCAAACCGAATCCGTATCAGCCCCGAAAAACTTTCGATGAAAATCATTTAAATGATTTGGCAGATTCAATTAAGCAAT
ATGGTATTTTGCAACCAATTGTGCTTAGAAAAACAGTTCAAGGTTATTACATTGTAGTTGGTGAAAGAAGGTTTAGAGCT
TCGAAAATTGCTGGTTTAAAATACGTATCAGCGATTATCAAAGATTTAACAGATGAAGATATGATGGAACTGGCGGTCAT
CGAAAATTTACAACGAGAAGACTTAAATGCGATAGAAGAAGCTGAAAGTTATCAACGTTTGATGACAGATTTGAAAATTA
CACAACAAGAAGTAGCGAAGCGATTGAGTAAGTCGCGCCCGTATATAGCGAATATGTTGAGGTTATTACATTTACCGAAA
AAGGTTGCTGACATGGTAAAAGATGGGCGACTGACAAGTGCACATGGACGAACGTTATTGGCAATTAAAGATGAACAACA
AATGCTTAGGTTAGCGAAACGGGTTGTTAAAGAAAAGTGGAGTGTTAGATATTTAGAAAATCATGTTAATGAATTAAAAA
ATGTTTCGTCAAAGTCGGAAACAGACAAAGTAGATATAACTAAGCCTAAATTTATAAAGCAACAAGAACGACAGTTGCGA
GAACAGTATGGCGCAAAAGTAGATATATCGATAAAAAAATCAGTCGGCAAAATCTCATTTGAGTTTGAATCACAAGATGA
CTTTGTGAGAATCATTGAACAATTAAATCGTAAGTATGGTAAATAG

Domains

Predicted by InterProScan.

HTH domain found in ParB protein (HTH_ParB)

(161-210)

ParB/Sulfiredoxin domain (ParB_N)

(22-109)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

40.613

92.883

0.377

Multiple sequence alignment