Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilB   Type   Machinery gene
Locus tag   CPZ02_RS19160 Genome accession   NZ_AP017610
Coordinates   3692602..3694083 (+) Length   493 a.a.
NCBI ID   WP_001219896.1    Uniprot ID   -
Organism   Escherichia coli strain 20Ec-P-124     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687602..3699083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CPZ02_RS19140 (MRY16002_c34350) gspB 3687771..3688190 (-) 420 WP_000461444.1 putative general secretion pathway protein GspB -
  CPZ02_RS19145 (MRY16002_c34360) gspA 3688192..3689661 (-) 1470 WP_000107581.1 type II secretion system protein GspA -
  CPZ02_RS19150 (MRY16002_c34370) gspC 3689841..3690656 (+) 816 WP_001142702.1 type II secretion system protein GspC -
  CPZ02_RS19155 (MRY16002_c34380) gspD 3690640..3692592 (+) 1953 WP_001562179.1 type II secretion system secretin GspD -
  CPZ02_RS19160 (MRY16002_c34390) pilB 3692602..3694083 (+) 1482 WP_001219896.1 type II secretion system ATPase GspE Machinery gene
  CPZ02_RS19165 (MRY16002_c34400) gspF 3694080..3695276 (+) 1197 WP_001109559.1 type II secretion system inner membrane protein GspF -
  CPZ02_RS19170 (MRY16002_c34410) gspG 3695286..3695723 (+) 438 WP_001202877.1 type II secretion system major pseudopilin GspG -
  CPZ02_RS19175 (MRY16002_c34420) gspH 3695731..3696240 (+) 510 WP_001076031.1 type II secretion system minor pseudopilin GspH -
  CPZ02_RS19180 (MRY16002_c34430) gspI 3696237..3696614 (+) 378 WP_001041738.1 type II secretion system minor pseudopilin GspI -
  CPZ02_RS19185 (MRY16002_c34440) gspJ 3696607..3697194 (+) 588 WP_000610629.1 type II secretion system minor pseudopilin GspJ -
  CPZ02_RS19190 (MRY16002_c34450) gspK 3697187..3698170 (+) 984 WP_001058528.1 type II secretion system minor pseudopilin GspK -

Sequence

Protein


Download         Length: 493 a.a.        Molecular weight: 54623.52 Da        Isoelectric Point: 6.1000

>NTDB_id=57092 CPZ02_RS19160 WP_001219896.1 3692602..3694083(+) (pilB) [Escherichia coli strain 20Ec-P-124]
MRIHSPYPASWALAQRIGYLYSEGEIIYLADTPFERLLDIQRQVGQCQTMTSLSQADFEARLEAVFHQNTGESQQIAQDI
DQSVDLLSLSEEMPANEDLLNEDSAAPVIRLINAILSEAIKETASDIHIETYEKTMSIRFRIDGVLRTILQPNKKLAALL
ISRIKVMARLDIAEKRIPQDGRISLRIGRRNIDVRVSTLPSIYGERAVLRLLDKNSLQLSLNNLGMTAADKQDLENLIQL
PHGIILVTGPTGSGKSTTLYAILSALNTPGRNILTVEDPVEYELEGIGQTQVNTRVDMSFARGLRAILRQDPDVVMVGEI
RDTETAQIAVQASLTGHLVLSTLHTNSASGAVTRLRDMGVESFLLSSSLAGIIAQRLVRRLCPQCRQFTPVSPQQAQMFK
YHQLAVTTIGTPVGCPHCHQSGYQGRMAIHEMMVVTPELRAAIHENVDEQALERLVRQQHNALIKNGLQKVISGDTSWDE
VMRVASATLENEA

Nucleotide


Download         Length: 1482 bp        

>NTDB_id=57092 CPZ02_RS19160 WP_001219896.1 3692602..3694083(+) (pilB) [Escherichia coli strain 20Ec-P-124]
ATGAGAATTCACTCACCGTACCCCGCCAGTTGGGCGCTGGCACAACGAATTGGTTATCTCTATTCAGAGGGCGAGATTAT
TTATCTCGCCGATACGCCATTCGAACGGTTACTCGATATTCAACGTCAGGTTGGCCAGTGCCAGACCATGACCAGCTTGT
CACAGGCTGATTTTGAAGCCCGGCTGGAAGCGGTGTTCCATCAGAATACCGGTGAGTCGCAACAGATTGCGCAGGATATC
GATCAATCCGTCGATCTTCTCTCGCTTTCGGAAGAGATGCCCGCAAATGAAGATCTCCTGAATGAAGATTCAGCGGCACC
GGTTATCCGCTTGATCAATGCGATTTTGAGTGAGGCCATCAAAGAAACCGCCTCCGATATCCACATTGAAACCTATGAAA
AAACAATGTCGATCCGTTTTCGCATCGACGGCGTTTTGCGGACAATTTTACAGCCAAACAAAAAACTGGCGGCACTGCTT
ATCTCCCGAATTAAGGTCATGGCTCGTCTTGATATCGCCGAAAAACGTATTCCACAGGATGGACGTATTAGTTTGCGTAT
CGGGCGACGTAACATAGATGTCCGCGTATCCACACTGCCGTCCATCTATGGTGAACGCGCCGTGCTCCGTCTGCTGGATA
AAAACAGCCTCCAGCTTTCATTGAACAACCTGGGGATGACGGCAGCGGATAAACAGGATTTAGAAAATCTCATCCAGCTT
CCACACGGTATTATCCTGGTGACCGGACCGACAGGCTCCGGTAAAAGCACCACGCTCTACGCCATCCTTTCGGCGCTGAA
TACTCCCGGCCGCAATATTCTGACGGTAGAAGATCCCGTGGAATATGAGCTGGAAGGCATTGGGCAAACGCAGGTGAATA
CCCGTGTGGATATGTCTTTCGCTCGCGGCCTGCGCGCCATACTTCGCCAGGACCCGGATGTCGTCATGGTGGGGGAAATT
CGTGATACAGAAACCGCGCAGATTGCGGTTCAGGCCTCGCTCACCGGCCATCTGGTACTCTCAACACTCCACACTAACAG
TGCATCAGGCGCAGTGACCCGGCTCCGCGACATGGGCGTCGAATCATTCCTGCTTTCGTCTTCCCTGGCAGGGATTATCG
CGCAACGTCTGGTTCGTCGCCTGTGTCCGCAATGCCGACAATTCACGCCCGTATCACCCCAACAAGCGCAGATGTTTAAA
TATCATCAGCTCGCGGTGACAACAATTGGCACTCCCGTAGGCTGCCCTCATTGCCATCAATCCGGCTATCAGGGGCGCAT
GGCGATCCACGAAATGATGGTGGTGACGCCGGAATTACGGGCCGCTATTCATGAAAATGTGGATGAACAAGCACTGGAGC
GACTGGTCCGGCAACAACACAATGCCTTAATCAAAAATGGCCTGCAAAAAGTGATAAGCGGTGACACCTCCTGGGATGAG
GTTATGCGCGTCGCCAGTGCCACGCTGGAGAACGAAGCATGA

Domains

Predicted by InterProScan.

Type II/IV secretion system protein (T2SSE)

(114-380)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilB Vibrio campbellii strain DS40M4

46.682

88.641

0.414
  pilB Acinetobacter baumannii D1279779

45.805

89.452

0.41
  pilB Vibrio cholerae strain A1552

48.441

84.584

0.41
  pilB Legionella pneumophila strain ERS1305867

41.372

97.566

0.404
  pilB Vibrio parahaemolyticus RIMD 2210633

46.353

86.207

0.4
  pilB/pilB1 Synechocystis sp. PCC 6803

41.202

94.523

0.389
  pilB Acinetobacter baylyi ADP1

48.593

79.31

0.385
  pilB Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.178

79.919

0.361
  pilF Thermus thermophilus HB27

45.063

80.122

0.361

Multiple sequence alignment